G1542101


Basic Information

Item Value
gene id G1542101
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35541459 ~ 35544343 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1764822
ctatctcactgcacagcacagggagctgattttgataggcgcgtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctctctgcacagggagctgattttgataggcgcatacagactgcagagtgaggtacatagctacagctcaacattaggtcagtctatctcacagtacagggagctgattttgaaaggcgagtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatgtcacagcacagggagcagattttgataggcgcgtacagactgcagagtgaggtaaaggtctacagctcaacactaggtcagtctatctcacagcacaggtagctgattttgataggtgagtacagact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1764822 True 399 lncRNA 0.47 2 35541459 35544343

Neighbor

gene id symbol gene type direction distance location
LOC118941148 NA coding upstream 36823 35441143 ~ 35504636 (+)
LOC118941149 NA coding upstream 107518 35412771 ~ 35433941 (+)
tomm40l LOC106588243 coding upstream 193164 35335048 ~ 35348295 (+)
LOC110496082 LOC106588242 coding upstream 216795 35237754 ~ 35324664 (+)
olah sast coding upstream 401625 35131761 ~ 35139834 (+)
LOC110496101 LOC106588519 coding downstream 345223 35889566 ~ 35908363 (+)
LOC110496105 LOC106588516 coding downstream 426714 35971057 ~ 35974902 (+)
LOC110496106 LOC106588513 coding downstream 454856 35999199 ~ 36021773 (+)
LOC110496108 LOC106588512 coding downstream 479550 36023893 ~ 36068107 (+)
LOC110496111 LOC106588509 coding downstream 537766 36076661 ~ 36091606 (+)
G1542055 NA non-coding upstream 21393 35519406 ~ 35520066 (+)
G1542062 NA non-coding upstream 22632 35518453 ~ 35518827 (+)
G1542056 NA non-coding upstream 23391 35512362 ~ 35518068 (+)
G1542053 NA non-coding upstream 33164 35505167 ~ 35508295 (+)
G1542051 LOC106588245 non-coding upstream 39395 35478835 ~ 35502933 (+)
G1542102 NA non-coding downstream 9835 35554178 ~ 35644509 (+)
G1542109 NA non-coding downstream 13719 35558062 ~ 35563652 (+)
G1542114 NA non-coding downstream 45943 35590286 ~ 35591065 (+)
G1542117 NA non-coding downstream 61259 35605602 ~ 35613417 (+)
G1542097 NA non-coding downstream 86711 35631054 ~ 35641177 (+)
G1542052 LOC106588245 other upstream 60111 35400723 ~ 35481348 (+)
G1542037 LOC106588244 other upstream 154996 35373871 ~ 35386463 (+)
G1541989 NA other upstream 257753 35282603 ~ 35283706 (+)
mbpa LOC106588233 other upstream 643048 34883492 ~ 34898413 (+)
G1542253 NA other downstream 291493 35835836 ~ 35836617 (+)
G1542254 yo84 other downstream 292334 35836677 ~ 35837543 (+)
G1542262 NA other downstream 301471 35845814 ~ 35846196 (+)
G1542282 NA other downstream 325894 35870237 ~ 35870558 (+)
G1542324 LOC106588514 other downstream 416858 35961201 ~ 35963705 (+)

Expression


Co-expression Network