G1542093


Basic Information

Item Value
gene id G1542093
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35542454 ~ 35599258 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1764813
cagggagctgattttgataggcgcgtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctctctgcacagggagctgattttgataggcgcatacagactgcagagtgaggtacatagctacagctcaacattaggtcagtctatctcacagtacagggagctgattttgaaaggcgagtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatgtcacagcacagggagcagattttgataggcgcgtacagactgcagagtgaggtaaaggtctacagctcaacactaggtcagtctatctcacagcacaggtagctgattttgataggcgagtacagactgcagagtgaggtacatatctacagctcaacattaggtcagtctatctcacagtacagggagctgattttgataggcgagtacagactgcagagtgaggtacagatctacagctcaacgttaggtcagtctatctcactgcacagcacagggagctgattttgataggtgagaacagactgcagagtgaggtacagatctacagctcaacattattc

Function

NR:

description
PREDICTED: cysteine-rich, acidic integral membrane protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1764813 True 597 lncRNA 0.47 2 35542454 35599258

Neighbor

gene id symbol gene type direction distance location
LOC118941148 NA coding upstream 37818 35441143 ~ 35504636 (+)
LOC118941149 NA coding upstream 108513 35412771 ~ 35433941 (+)
tomm40l LOC106588243 coding upstream 194159 35335048 ~ 35348295 (+)
LOC110496082 LOC106588242 coding upstream 217790 35237754 ~ 35324664 (+)
olah sast coding upstream 402620 35131761 ~ 35139834 (+)
LOC110496101 LOC106588519 coding downstream 290308 35889566 ~ 35908363 (+)
LOC110496105 LOC106588516 coding downstream 371799 35971057 ~ 35974902 (+)
LOC110496106 LOC106588513 coding downstream 399941 35999199 ~ 36021773 (+)
LOC110496108 LOC106588512 coding downstream 424635 36023893 ~ 36068107 (+)
LOC110496111 LOC106588509 coding downstream 482851 36076661 ~ 36091606 (+)
G1542055 NA non-coding upstream 22388 35519406 ~ 35520066 (+)
G1542062 NA non-coding upstream 23627 35518453 ~ 35518827 (+)
G1542056 NA non-coding upstream 24386 35512362 ~ 35518068 (+)
G1542053 NA non-coding upstream 34159 35505167 ~ 35508295 (+)
G1542051 LOC106588245 non-coding upstream 40390 35478835 ~ 35502933 (+)
G1542117 NA non-coding downstream 6344 35605602 ~ 35613417 (+)
G1542097 NA non-coding downstream 31796 35631054 ~ 35641177 (+)
G1542100 NA non-coding downstream 43960 35643218 ~ 35649719 (+)
G1542123 NA non-coding downstream 52909 35652167 ~ 35652814 (+)
G1542125 NA non-coding downstream 54322 35653580 ~ 35655697 (+)
G1542052 LOC106588245 other upstream 61106 35400723 ~ 35481348 (+)
G1542037 LOC106588244 other upstream 155991 35373871 ~ 35386463 (+)
G1541989 NA other upstream 258748 35282603 ~ 35283706 (+)
mbpa LOC106588233 other upstream 644043 34883492 ~ 34898413 (+)
G1542253 NA other downstream 236578 35835836 ~ 35836617 (+)
G1542254 yo84 other downstream 237419 35836677 ~ 35837543 (+)
G1542262 NA other downstream 246556 35845814 ~ 35846196 (+)
G1542282 NA other downstream 270979 35870237 ~ 35870558 (+)
G1542324 LOC106588514 other downstream 361943 35961201 ~ 35963705 (+)

Expression


Co-expression Network