G1542109


Basic Information

Item Value
gene id G1542109
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35558062 ~ 35563652 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1764830
caacattagctcagtctatctcactgcacaacagagggagctgattttgataggcgcgtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcacagtacagggagctgattttgaaaggtgagtacagactgcagagtgaggcacagatctacagctcaacattaggtcagtctatctcactgcacagcacagggagctgattttgataggcgcgtacagactgcagagtgaggtacagatctacagctcaacactaggtcagtctatctcacagaacaggtagctgattttgataggcgcgtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcacagtacagggagctgattttgaaaggtgagtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcactgcacagcacagggagctgatttttataggcgcgtacagactgcaaagtgaagtacatatctacagctcaacattaggtcagtctatctcactgcacagcacagggagctgattttgataggcgtgtACAGACTGCAaaatgaggtacagatctacagctcaacattaggtcagtctatctcactgcacagcacagggagctgattttgataggcgcgtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcactgcacagcacagggagctgattttgataggcgcgtacagactgcagagtgaggtacagatctacagctcaaaattaggtcagtctatctcacagcacagggagctgattccgataggtgcgtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcactgcacagcacagggagctgattttgataggtgagaacagactgcagagtgaggtacagatctacagctcaacattaggtc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1764830 True 1004 lncRNA 0.47 2 35558062 35563652

Neighbor

gene id symbol gene type direction distance location
LOC118941148 NA coding upstream 53426 35441143 ~ 35504636 (+)
LOC118941149 NA coding upstream 124121 35412771 ~ 35433941 (+)
tomm40l LOC106588243 coding upstream 209767 35335048 ~ 35348295 (+)
LOC110496082 LOC106588242 coding upstream 233398 35237754 ~ 35324664 (+)
olah sast coding upstream 418228 35131761 ~ 35139834 (+)
LOC110496101 LOC106588519 coding downstream 325914 35889566 ~ 35908363 (+)
LOC110496105 LOC106588516 coding downstream 407405 35971057 ~ 35974902 (+)
LOC110496106 LOC106588513 coding downstream 435547 35999199 ~ 36021773 (+)
LOC110496108 LOC106588512 coding downstream 460241 36023893 ~ 36068107 (+)
LOC110496111 LOC106588509 coding downstream 518457 36076661 ~ 36091606 (+)
G1542101 NA non-coding upstream 13719 35541459 ~ 35544343 (+)
G1542055 NA non-coding upstream 37996 35519406 ~ 35520066 (+)
G1542062 NA non-coding upstream 39235 35518453 ~ 35518827 (+)
G1542056 NA non-coding upstream 39994 35512362 ~ 35518068 (+)
G1542053 NA non-coding upstream 49767 35505167 ~ 35508295 (+)
G1542114 NA non-coding downstream 26634 35590286 ~ 35591065 (+)
G1542117 NA non-coding downstream 41950 35605602 ~ 35613417 (+)
G1542097 NA non-coding downstream 67402 35631054 ~ 35641177 (+)
G1542100 NA non-coding downstream 79566 35643218 ~ 35649719 (+)
G1542123 NA non-coding downstream 88515 35652167 ~ 35652814 (+)
G1542090 NA other upstream 12083 35529543 ~ 35606179 (+)
G1542051 LOC106588245 other upstream 55129 35478835 ~ 35502933 (+)
G1542052 LOC106588245 other upstream 76714 35400723 ~ 35481348 (+)
G1542037 LOC106588244 other upstream 171599 35373871 ~ 35386463 (+)
G1541989 NA other upstream 274356 35282603 ~ 35283706 (+)
G1542253 NA other downstream 272184 35835836 ~ 35836617 (+)
G1542254 yo84 other downstream 273025 35836677 ~ 35837543 (+)
G1542262 NA other downstream 282162 35845814 ~ 35846196 (+)
G1542282 NA other downstream 306585 35870237 ~ 35870558 (+)
G1542324 LOC106588514 other downstream 397549 35961201 ~ 35963705 (+)

Expression


Co-expression Network