G1542097


Basic Information

Item Value
gene id G1542097
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35631054 ~ 35641177 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1764818
gcagagtggggtacagatctacagctaaacattaggtcagtctatctcacagtacaggaagctgattttgaaaggcgagtacagactgcagagtgaggtaaagatctacagctcaacattaggtcagtctatctcacagtacaggaagctgattttgaaaggtgagtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcacagcaaagggagctgattttgataggcgagtacagactgcagagtgaggtacatatctacagctcaacattaggtcagtctatctcacagtacacggagctgattttgatatgcgcgtacagactgcagagtgaggtacagatctacagcacaaaattaggtcagtctatctcacagcacagggagctgatttcgataggcgagtacagactgcagagtgaggtacatatctacagctcaacattaggtcagtctatctctctgcacagcacagggggctgattttgataggcgagtacagactgcagagtgaggtacatatctacagctcaacattaggtcagtctatctcacagcacagggagctgattttgaaaagtgagtacagactgcagagtggggtacagatctacagctaaacattaggtcagtctatctcacagtacaggaagctgattttgaaaggcgagtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcacagcacagggagctgattttgataggtgagtacagactgcagagtgaggtacatatctacagctcaacattaggtcagtctatctcactgcacagggagctgattttgataggcgagtacagactgcagagtgaggtacatatctacagctcaacattaggtcagtctatctcacagtacagggagctgattttgatatgcgcgtacagactgcagagtgaggtaccgATCTGCAGcacaaaattaggtcagtctatcttacagcacagggagctgatttcgataggcgcgtacagactgcagagtgaggtacagatctacagctcaacattaggttagtctatctcacagcacagggagctgattttgaaaggggcgtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcacagtacagggagctgattttgaaaggcgcgtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcacagcacagggagctgattttgataggcgagtacagactgcagagtgcggtacagatctacagctcaacattaggtcagtctatctcactgcacatcacagggagctgattttgatatgcgcgtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcacagcacagggagctgaatttgataggtgagtacagactgcagagtgaggtacatatctacagctcaacattaggtcagtctctcactgcacaacagagggagcttattttgaaaggcgcgtacagactgcagagtgaggtacagatctacaactcaacattaggtcagtctatctcactgcacagcacagggagctgattttgataggcgcatacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcactgcacagcacagggagctgaatttgataggtgagtacagactgcagtgtgaggtacagatctacagctcaacattaggtcagtctatctcacagtacagggagctgattttcaaaggtgagtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcacagtacagggagctgattttgaaaagcgagtacagactgcagagtggggtacagatctacagctcaacattaggtcagtctatctcacagtacaggaagctgattttgaaaggtgagtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcacagcaaagggagctgattttgataggcgagtacagactgcagagtgaggtacatatctacagctcaacattaggtcagtctatctcacagtacacggagctgattttgatatgcgcgtacagactgcagagtgaggtacagatctacagcacaaaattaggtcagtctatctcacagcacagggagctgatttcgataggcgagtacagactgcagagtgaggtacatatctacagctcaacattaggtcagtctatctctctgcacagcacagggagctgattttgataggcaagaacagactgcagagtgaggtacatatctacagctcaacattaggtcagtctatctcacagcacagggagctgattttgaaaagtgagtacagact

Function

NR:

description
PREDICTED: cysteine-rich, acidic integral membrane protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1764818 True 2464 lncRNA 0.46 4 35631054 35641177

Neighbor

gene id symbol gene type direction distance location
LOC118941148 NA coding upstream 126418 35441143 ~ 35504636 (+)
LOC118941149 NA coding upstream 197113 35412771 ~ 35433941 (+)
tomm40l LOC106588243 coding upstream 282759 35335048 ~ 35348295 (+)
LOC110496082 LOC106588242 coding upstream 306390 35237754 ~ 35324664 (+)
olah sast coding upstream 491220 35131761 ~ 35139834 (+)
LOC110496101 LOC106588519 coding downstream 248389 35889566 ~ 35908363 (+)
LOC110496105 LOC106588516 coding downstream 329880 35971057 ~ 35974902 (+)
LOC110496106 LOC106588513 coding downstream 358022 35999199 ~ 36021773 (+)
LOC110496108 LOC106588512 coding downstream 382716 36023893 ~ 36068107 (+)
LOC110496111 LOC106588509 coding downstream 440932 36076661 ~ 36091606 (+)
G1542117 NA non-coding upstream 17637 35605602 ~ 35613417 (+)
G1542091 NA non-coding upstream 20349 35538466 ~ 35610705 (+)
G1542090 NA non-coding upstream 24875 35529543 ~ 35606179 (+)
G1542093 NA non-coding upstream 31796 35542454 ~ 35599258 (+)
G1542114 NA non-coding upstream 39989 35590286 ~ 35591065 (+)
G1542100 NA non-coding downstream 2041 35643218 ~ 35649719 (+)
G1542123 NA non-coding downstream 10990 35652167 ~ 35652814 (+)
G1542125 NA non-coding downstream 12403 35653580 ~ 35655697 (+)
G1542158 NA non-coding downstream 60443 35701620 ~ 35708671 (+)
G1542177 NA non-coding downstream 100213 35741390 ~ 35743541 (+)
G1542051 LOC106588245 other upstream 128121 35478835 ~ 35502933 (+)
G1542052 LOC106588245 other upstream 149706 35400723 ~ 35481348 (+)
G1542037 LOC106588244 other upstream 244591 35373871 ~ 35386463 (+)
G1541989 NA other upstream 347348 35282603 ~ 35283706 (+)
G1542253 NA other downstream 194659 35835836 ~ 35836617 (+)
G1542254 yo84 other downstream 195500 35836677 ~ 35837543 (+)
G1542262 NA other downstream 204637 35845814 ~ 35846196 (+)
G1542282 NA other downstream 229060 35870237 ~ 35870558 (+)
G1542324 LOC106588514 other downstream 320024 35961201 ~ 35963705 (+)

Expression


Co-expression Network