G1542177


Basic Information

Item Value
gene id G1542177
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35741390 ~ 35743541 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1764914
AAGAACAtcaagaataaaataaaaagtgcgTAGAAAAGATgtaacaggtttagaaatgttgtaTACAACTATGTACAGACAAAGTTCGCTTTGTGCCAAGGTAACAACCATGTTCAACACGCAATGagattcatttttattttaaatatatttaaataatcCTACAGAAATAACACAAACTGCATTTATTCATTACTCTGGGGCAGAGACCTCTCCAAACCCCAATCTTCTCTTGTTTATGCCATGGTGAGCCACAGAGGTAGTACACCCgcaagagacaggggagaggagtgtCACTGTCAGGTAAGTAGAAGGGGAAAACAGAGAAGATAAAGGACGACTAACTGAACATAGGCTTCGACCAGGTATTGTACTGTAAGTTTCATGCCCCTGTTTAAAATTAGTGGGTGTTCAGTAGCGAATATAAACCAGGTTAATATTTGACaacacatatttatttattttcattagcATTTTGATTATTCATTTATACCAATATACAACAATACATATACAAATTGGGTTGTAAAATGATAGGGAGGGAGTAGAGTACTATCAAAGCATTTTTTCCCTCACCCCAAACCATATTATTTTCCCCAATATTAAAGTCTGGAAGATCATGAACAAAACGGCACAAAAACAATAGTGAAAAAAAGTATACCTGGCAGACtaaaaacatgtttcattatttctTTCTAGAGGGGTGCGTCACAAGATATGTTTTCACAGATCTAAAGCATGACATTCTAATTTCAAGTACAGGGGAGAAATGAGTGAAGAACatgtttaaaggtagactcagcgatatgatgtagatgcagaaagtaaaacAGCATAATGGGTCAATTTCTGCAACAACTAGAACACTTAAGAACGAGGTTTAACTTCGCCACTGTTTTGGTGCCCTTGCTAACACGCTGTAACCTTGTGAACTGAACTTGTGCGCACATGTGCAGACACTTTGTTAGATTGAAGCCTTGCTATTCGTGGCAACGTCATTTCGCTGAGTGTACCTTTAATCATGTAGGGATTTCATTAAAAACATAGGTGAAAGCAAACCTTTTGGGTAGTTTTCATCAGCACCTTCATAAAAGAGCAACAATCTGAACTTGCCCCATGCTCATAAGAGTTCTGTCTTGTATGTTACCtttttccctatgggccctggacaaaagtagtgcactatgtagggaatttgggatgcagactgttATAATGGTCTCCATAATATCGAAATGGACAATTAAAATATAGCTGCTCTAAAAATGTATACTGGAGGTGGCTTGGgtcaaagtaaaaaaataaaacaggcTTTTCTTCGTCCAATTTACAGGTCAGCATTGCCTTTTATGTACAGCAATGCTTGCGCTTATGACCATGGAAAATAAGGTGCTAAAATCAGTTGCCTCCACTTGAATGTAGCCTTCTATTGTCATAGCTACAATAACATGGAATTCCTCTTTAAAACAGAGTAATTGACTGATGAGAAACAACTGAAATGAAGTACATAACCAACCACATCTCTGGTCCAAGTGATCAGCACCACAACTGTGGAATATTTCGCTCCATTTTTATTAGAGGCCATTGGCGACTGAGTAAAGAACGTAGACAAACCAAGCGAGTTGACCATGAGATTGCGTAATGTCACCAGTGTACGAAATTACTGAGGTCTGAATCAACTGGGTTGCCTTGCAGGCCTAGAATAAATGCCTGTAGCTGTAGACattttgtctcacaaacactgaTAGCTCTTCATACCACAAACGTGTTGTATCATTTGGCGCCCTTTTTGGTTTCTGCGACAGAGGGAGCGGCTCAAGAAGCCCTCTAGGACAGGGTGtttccaaactcggtcctggggctccccctgggtgcacat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1764914 True 1879 lncRNA 0.39 2 35741390 35743541

Neighbor

gene id symbol gene type direction distance location
LOC118941148 NA coding upstream 236754 35441143 ~ 35504636 (+)
LOC118941149 NA coding upstream 307449 35412771 ~ 35433941 (+)
tomm40l LOC106588243 coding upstream 393095 35335048 ~ 35348295 (+)
LOC110496082 LOC106588242 coding upstream 416726 35237754 ~ 35324664 (+)
olah sast coding upstream 601556 35131761 ~ 35139834 (+)
LOC110496101 LOC106588519 coding downstream 146025 35889566 ~ 35908363 (+)
LOC110496105 LOC106588516 coding downstream 227516 35971057 ~ 35974902 (+)
LOC110496106 LOC106588513 coding downstream 255658 35999199 ~ 36021773 (+)
LOC110496108 LOC106588512 coding downstream 280352 36023893 ~ 36068107 (+)
LOC110496111 LOC106588509 coding downstream 338568 36076661 ~ 36091606 (+)
G1542158 NA non-coding upstream 32719 35701620 ~ 35708671 (+)
G1542125 NA non-coding upstream 85693 35653580 ~ 35655697 (+)
G1542123 NA non-coding upstream 88576 35652167 ~ 35652814 (+)
G1542100 NA non-coding upstream 91671 35643218 ~ 35649719 (+)
G1542097 NA non-coding upstream 100213 35631054 ~ 35641177 (+)
G1542179 LOC106588247 non-coding downstream 1153 35744694 ~ 35745503 (+)
G1542183 NA non-coding downstream 6932 35750473 ~ 35750702 (+)
G1542184 NA non-coding downstream 7821 35751362 ~ 35752105 (+)
G1542185 NA non-coding downstream 8618 35752159 ~ 35752421 (+)
G1542190 NA non-coding downstream 13989 35757530 ~ 35757743 (+)
G1542090 NA other upstream 195411 35529543 ~ 35606179 (+)
G1542051 LOC106588245 other upstream 238457 35478835 ~ 35502933 (+)
G1542052 LOC106588245 other upstream 260042 35400723 ~ 35481348 (+)
G1542037 LOC106588244 other upstream 354927 35373871 ~ 35386463 (+)
G1541989 NA other upstream 457684 35282603 ~ 35283706 (+)
G1542253 NA other downstream 92295 35835836 ~ 35836617 (+)
G1542254 yo84 other downstream 93136 35836677 ~ 35837543 (+)
G1542262 NA other downstream 102273 35845814 ~ 35846196 (+)
G1542282 NA other downstream 126696 35870237 ~ 35870558 (+)
G1542324 LOC106588514 other downstream 217660 35961201 ~ 35963705 (+)

Expression


Co-expression Network