G1542179 (LOC106588247)


Basic Information

Item Value
gene id G1542179
gene name LOC106588247
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35744694 ~ 35745503 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1764918
attaataatatcaGAACGTTTTAAAATAGTTTCTTAGTGACCTGTAAACCCCCACTGCTTCCTTGGAGGTCTTCTCCAGGTGTCTGAAGCGCATGGCCATGGGAAGCTCTGTGCTGGTGGCTCGTCTAGTGGATTTCAGTGGGAAGTCGTCATCCTCTTCGTCACATGGCGTGGACATGATGTCAGGCAGCTGTCTGTGTTGAGATGCCAAGAAGTTAAACATGTCGAAGGTTGACTTCCGTGAGTAGACCTCAGCGCGGGCGCAGCCACTGGGGTTGATGGGCAGCTCGTCGTCAGGGGTGTCGTAGCGGTGGAAGCGAAAGCGGTGTTGCTTGCACCCTGCGGCGCCCTGCAGCTGCTCCAGTAGGAAGATGACAGCGTCATGGAGCAGGCCCAGAACGCGCGCCCCGCTCACCCCGCCGAGGGGCAACGCCTTCAGATGGAACCCTGCTCGGGCCTCCAGGACGCCGTCAATCACCGCTCGCC

Function

NR:

description
histone-lysine N-methyltransferase 2B-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1764918 True 486 lncRNA 0.58 3 35744694 35745503

Neighbor

gene id symbol gene type direction distance location
LOC118941148 NA coding upstream 240058 35441143 ~ 35504636 (+)
LOC118941149 NA coding upstream 310753 35412771 ~ 35433941 (+)
tomm40l LOC106588243 coding upstream 396399 35335048 ~ 35348295 (+)
LOC110496082 LOC106588242 coding upstream 420030 35237754 ~ 35324664 (+)
olah sast coding upstream 604860 35131761 ~ 35139834 (+)
LOC110496101 LOC106588519 coding downstream 144063 35889566 ~ 35908363 (+)
LOC110496105 LOC106588516 coding downstream 225554 35971057 ~ 35974902 (+)
LOC110496106 LOC106588513 coding downstream 253696 35999199 ~ 36021773 (+)
LOC110496108 LOC106588512 coding downstream 278390 36023893 ~ 36068107 (+)
LOC110496111 LOC106588509 coding downstream 336606 36076661 ~ 36091606 (+)
G1542177 NA non-coding upstream 1153 35741390 ~ 35743541 (+)
G1542158 NA non-coding upstream 36023 35701620 ~ 35708671 (+)
G1542125 NA non-coding upstream 88997 35653580 ~ 35655697 (+)
G1542123 NA non-coding upstream 91880 35652167 ~ 35652814 (+)
G1542100 NA non-coding upstream 94975 35643218 ~ 35649719 (+)
G1542183 NA non-coding downstream 4970 35750473 ~ 35750702 (+)
G1542184 NA non-coding downstream 5859 35751362 ~ 35752105 (+)
G1542185 NA non-coding downstream 6656 35752159 ~ 35752421 (+)
G1542190 NA non-coding downstream 12027 35757530 ~ 35757743 (+)
G1542191 NA non-coding downstream 14561 35760064 ~ 35760306 (+)
G1542090 NA other upstream 198715 35529543 ~ 35606179 (+)
G1542051 LOC106588245 other upstream 241761 35478835 ~ 35502933 (+)
G1542052 LOC106588245 other upstream 263346 35400723 ~ 35481348 (+)
G1542037 LOC106588244 other upstream 358231 35373871 ~ 35386463 (+)
G1541989 NA other upstream 460988 35282603 ~ 35283706 (+)
G1542253 NA other downstream 90333 35835836 ~ 35836617 (+)
G1542254 yo84 other downstream 91174 35836677 ~ 35837543 (+)
G1542262 NA other downstream 100311 35845814 ~ 35846196 (+)
G1542282 NA other downstream 124734 35870237 ~ 35870558 (+)
G1542324 LOC106588514 other downstream 215698 35961201 ~ 35963705 (+)

Expression


Co-expression Network