G1542273


Basic Information

Item Value
gene id G1542273
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35858673 ~ 35859234 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1765014
TCCACTTCCCCCATCTGCTTCACCACATCCCAGATAGTGCAGAGGGTGTCCACTACATCCCGCCCCGGAAGTCCATAGGCCTGAGTAGGTGCTATGATGCTTCCCATCACCTTATTCAACCTATTGGCCATTATCGGCAAGCACCTTATTGTCTGAGTTCAAAAGTAAATAAGCCGACGTAAATAAGCCCTTGTAAAAATAATGCACTGTATTCAAAATACCTTCCAGACCCGtcaccttctcccctctctcatttAACAGCTCAGTTAGAAAACTCCTTTCCTGCTTCTGCCTTTCTAACCCCAGGAAAAAAGCAgtatttctctccccctccaccacatACTGTGCTCTACTCCTCACCACTGCCCCCATACACCTGTGCCTCTCTAcgaccctcaactcctcccacaCCCTCAGGTACTCTGTCACATCATAGCCTGGACTGTTTTCTACCTTTTCTAACTCCAATAACAGGCGGGATTTAagaatcccctcctccctcctccttaacACATTTGCCTGTCTTGAACTAGATATTGCCAGCCGCTTGAACTTCCCTTTT

Function

NR:

description
PREDICTED: uncharacterized protein LOC106938708

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1765014 True 562 lncRNA 0.48 1 35858673 35859234

Neighbor

gene id symbol gene type direction distance location
LOC118941148 NA coding upstream 354037 35441143 ~ 35504636 (+)
LOC118941149 NA coding upstream 424732 35412771 ~ 35433941 (+)
tomm40l LOC106588243 coding upstream 510378 35335048 ~ 35348295 (+)
LOC110496082 LOC106588242 coding upstream 534009 35237754 ~ 35324664 (+)
olah sast coding upstream 718839 35131761 ~ 35139834 (+)
LOC110496101 LOC106588519 coding downstream 30332 35889566 ~ 35908363 (+)
LOC110496105 LOC106588516 coding downstream 111823 35971057 ~ 35974902 (+)
LOC110496106 LOC106588513 coding downstream 139965 35999199 ~ 36021773 (+)
LOC110496108 LOC106588512 coding downstream 164659 36023893 ~ 36068107 (+)
LOC110496111 LOC106588509 coding downstream 222875 36076661 ~ 36091606 (+)
G1542272 NA non-coding upstream 418 35857745 ~ 35858255 (+)
G1542271 NA non-coding upstream 1093 35857003 ~ 35857580 (+)
G1542269 NA non-coding upstream 2915 35854735 ~ 35855758 (+)
G1542268 NA non-coding upstream 6499 35850470 ~ 35852174 (+)
G1542256 NA non-coding upstream 19893 35838455 ~ 35838780 (+)
G1542274 NA non-coding downstream 665 35859899 ~ 35860107 (+)
G1542275 NA non-coding downstream 2105 35861339 ~ 35861761 (+)
G1542276 NA non-coding downstream 2761 35861995 ~ 35863689 (+)
G1542277 NA non-coding downstream 5424 35864658 ~ 35865225 (+)
G1542278 NA non-coding downstream 7298 35866532 ~ 35866766 (+)
G1542262 NA other upstream 12477 35845814 ~ 35846196 (+)
G1542254 yo84 other upstream 21130 35836677 ~ 35837543 (+)
G1542253 NA other upstream 22056 35835836 ~ 35836617 (+)
G1542090 NA other upstream 312694 35529543 ~ 35606179 (+)
G1542051 LOC106588245 other upstream 355740 35478835 ~ 35502933 (+)
G1542282 NA other downstream 11003 35870237 ~ 35870558 (+)
G1542324 LOC106588514 other downstream 101967 35961201 ~ 35963705 (+)
G1544007 NA other downstream 905060 36764294 ~ 36765233 (+)
G1544137 NA other downstream 1003689 36862923 ~ 36863183 (+)

Expression


Co-expression Network