G1542278


Basic Information

Item Value
gene id G1542278
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35866532 ~ 35866766 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1765019
gctacggcggtggaatcatttcacggggcgcTATTTTTCAtgaaactggacctcaggagcgtgtataatctggtgcgtatttggtagggagatgagtggaaaaccgcgtttagtaccacatctggccatATGGTGCggttcttgggcgactgctgaagcatgacctgtacgtgaaGGCAGAGAAATGTGAATTTTACAAacgagccgtttccttcctgggttatcgcatttccac

Function

NR:

description
PREDICTED: uncharacterized protein LOC106586556

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1765019 True 235 lncRNA 0.49 1 35866532 35866766

Neighbor

gene id symbol gene type direction distance location
LOC118941148 NA coding upstream 361896 35441143 ~ 35504636 (+)
LOC118941149 NA coding upstream 432591 35412771 ~ 35433941 (+)
tomm40l LOC106588243 coding upstream 518237 35335048 ~ 35348295 (+)
LOC110496082 LOC106588242 coding upstream 541868 35237754 ~ 35324664 (+)
olah sast coding upstream 726698 35131761 ~ 35139834 (+)
LOC110496101 LOC106588519 coding downstream 22800 35889566 ~ 35908363 (+)
LOC110496105 LOC106588516 coding downstream 104291 35971057 ~ 35974902 (+)
LOC110496106 LOC106588513 coding downstream 132433 35999199 ~ 36021773 (+)
LOC110496108 LOC106588512 coding downstream 157127 36023893 ~ 36068107 (+)
LOC110496111 LOC106588509 coding downstream 215343 36076661 ~ 36091606 (+)
G1542277 NA non-coding upstream 1307 35864658 ~ 35865225 (+)
G1542276 NA non-coding upstream 2843 35861995 ~ 35863689 (+)
G1542275 NA non-coding upstream 4771 35861339 ~ 35861761 (+)
G1542274 NA non-coding upstream 6425 35859899 ~ 35860107 (+)
G1542273 NA non-coding upstream 7298 35858673 ~ 35859234 (+)
G1542279 NA non-coding downstream 710 35867476 ~ 35867738 (+)
G1542280 NA non-coding downstream 1435 35868201 ~ 35868401 (+)
G1542281 NA non-coding downstream 2021 35868787 ~ 35868988 (+)
G1542283 NA non-coding downstream 4835 35871601 ~ 35874188 (+)
G1542295 NA non-coding downstream 20394 35887160 ~ 35887410 (+)
G1542262 NA other upstream 20336 35845814 ~ 35846196 (+)
G1542254 yo84 other upstream 28989 35836677 ~ 35837543 (+)
G1542253 NA other upstream 29915 35835836 ~ 35836617 (+)
G1542090 NA other upstream 320553 35529543 ~ 35606179 (+)
G1542051 LOC106588245 other upstream 363599 35478835 ~ 35502933 (+)
G1542282 NA other downstream 3471 35870237 ~ 35870558 (+)
G1542324 LOC106588514 other downstream 94435 35961201 ~ 35963705 (+)
G1544007 NA other downstream 897528 36764294 ~ 36765233 (+)
G1544137 NA other downstream 996157 36862923 ~ 36863183 (+)

Expression


Co-expression Network