G1542283


Basic Information

Item Value
gene id G1542283
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35871601 ~ 35874188 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1765024
ATTCAACTTCAGAAAATACGATGCATTCAAGGTGAAAATAATTTCCCGTTCATTGTGGTTAATTTTCAAAGAACTTGTTTCATGTCTATGAATGCTAGTTTTATTTAGTATCTTCAATAATTATGAATTTTGTTCACTCCCCATTATAAATTTGGCTTTAATGCCTAAcacataatacattttagaagacACTGTGATTCTACTATAAGATTCTGGCAACACTATCATAAAGAAAAATATTTATATTACTTCTATAAGTGTGACAAACAAAATAGTTAAGGATATCTGCATTATTCTCTTTTCTAACCTTCTCTTACAGCCACATCTTACATTTTGTCTTACAGTGTACATTTGTGTACGATTTCTTTGTTCCAAAATCTCCATTTGAATCTAATGTTCACCCACACAGCATGAAACAGGGCGTGgctaacaaaaataatatttcacATACTTTTCAGGGAAGTACAGGATACTTTACATAATCTACAGACCCAGGGGATATCCCAAAACATTACAAGAGGCTTAATACAATTGTAATATCTGGAACAATTTTAACAGTATGTTTCCACACAGTGTGGCTCAATTGCTGCTCAGTTCACATATTTTCCACAAATTGTACAGTATCTAAacgtatatatattatattaatactcagacacacatcacacctccttTAAACACTATCAGAAAATCTTACCTGAAATATTAAAACCACAAATCTTAAAAGGTCATCAACATAGGAAGCCCTTCTATTAAATGTACACACTTTCAGGAAAGGGAGGATAATAAAGGGTGTAAGATAGAGAATTAGCTTACAGTAAGAGAAGAATATATGCTAAATATAATACAAAATCAAGTGCACTTAAAAGACCATAACATTGGCAATTCAACTTGACACAATGAGTTCACATGCATCCAGATTCCTCAATACAAGGCAACAGTTTCTAACCAAAATCACTTTCGAATAAATGACCAATCAAATCCTTATGTGCAATTAACCAGATGCAGTGTCTTACCACTAAACAAGGAATCTATTTCATATCAGTATGTCAGCTTCACAGAAGGGTTCAGGAAGGTGAACTGAGGAAAACTACATCTGCTGTGGAGTGCGCTAGCTAGATGAGACTGATCAAATCTGCTACAGCAACACTGAGTTGAAGTATTTGTGACACAATCACAGTTGATTATTATACTTTCAACTTATAGCACCAAATGGGTGAATGAAATGACAGATCCCTGGCGCCATGCCTCGTAAAAACAACATCAAGTTGATGGTATTCAAACTATACATGTCCTATTGAGTCAATCATTTTACGAGTCAATTCACTCACATAAAACGGTCTCATCATACAAACATCTCTCACGTCAAAAGTTGGCAAGAACCATCCTTCAAAAAAAGGAAACCGTAAAAAATTCCTTGACATTGTTAAAGTGCAACCATTCTGTTATGGACTGGGAGGCAGAGGGCTGGGAGCTGCATTTACTAGGCATTAAAATGTCTAAAGCTGTATTTTTACCTTTTTTTGCCATATGGAAATAGCAGTTGCAAGTCTTTCCCAATATTTTTATGGCTTGGTGACACATAACCCTCTAAATATTTGCCTTCCACCCATCTCTTTTattttgtgatgtgtgtgtgtgtgtgtgtgtggaccggGGGGGGgcaaactcccccccccccccccccccctctcagctATAGGAGCCTCAACAGAAAGGAAGCGTAGCTACACCAACATCCCACCAATTATTACAGACTATCATATCTTCAGTAAAGGACAGGACACCTGTGCTTGGACCATACTAATAACATGTatattaggcaccaaatggaggaaaacagactaaaacagggagggactagcTGAACTTCCCATTTCCTGTTGCAGAATGTTTTTGCCCTAATGTGTGCCCTAATGAAACCAACCCTGATATATTTAAAAGCCCACCTTAGGATAAAGTGGCACACAACTGTCATTATTGGTACAATAAAAACAGGAGTAGTTTGTATGTCTCCCTCCACCAATCAAAACAAAGTGGTGCTGCAAAGTCCCATGAGTCCTCCGTCCTGAGAGAATCTTCAACATCCTCTTCCCTTTCCCTCCcctaaccataaccacttAAGAGGATAAAAATATCTGGGCCTGTATTCAAAAAGTATCTGAGTAaaaatgctgatctaggatctatATAATctaattcattatgatctaaaaaaaaggctaaactgatgCTAGTTCAGCACACCAAGACACTAAGAACACAGACCTTGGACCAGTGGTTAGAGGCAGACTCTACCTAGTCCCCCACCCCAGCCTTATTCTACTACCATCCACCGTAGAGGTGGATCTTGGCGAAGGAGATGGTCTCATCGTAGTCTTTGTGGCCTTTCTCGTAGATGACAAAGATGAACTTCCTGTCCTCTGCGCTGCCGCTCGTAAGTGACGTCATGCAGGAGTAGCCACTTGGGCCCGCCCAGATCTGCACAGTGTTCTTCTCCCACGATGTGCCATTGGTCAGAGACCAGCGCAGGGTT

Function

NR:

description
sialidase-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1765024 True 2536 lncRNA 0.39 2 35871601 35874188

Neighbor

gene id symbol gene type direction distance location
LOC118941148 NA coding upstream 366965 35441143 ~ 35504636 (+)
LOC118941149 NA coding upstream 437660 35412771 ~ 35433941 (+)
tomm40l LOC106588243 coding upstream 523306 35335048 ~ 35348295 (+)
LOC110496082 LOC106588242 coding upstream 546937 35237754 ~ 35324664 (+)
olah sast coding upstream 731767 35131761 ~ 35139834 (+)
LOC110496101 LOC106588519 coding downstream 15378 35889566 ~ 35908363 (+)
LOC110496105 LOC106588516 coding downstream 96869 35971057 ~ 35974902 (+)
LOC110496106 LOC106588513 coding downstream 125011 35999199 ~ 36021773 (+)
LOC110496108 LOC106588512 coding downstream 149705 36023893 ~ 36068107 (+)
LOC110496111 LOC106588509 coding downstream 207921 36076661 ~ 36091606 (+)
G1542281 NA non-coding upstream 2613 35868787 ~ 35868988 (+)
G1542280 NA non-coding upstream 3200 35868201 ~ 35868401 (+)
G1542279 NA non-coding upstream 3863 35867476 ~ 35867738 (+)
G1542278 NA non-coding upstream 4835 35866532 ~ 35866766 (+)
G1542277 NA non-coding upstream 6376 35864658 ~ 35865225 (+)
G1542295 NA non-coding downstream 12972 35887160 ~ 35887410 (+)
G1542296 NA non-coding downstream 14106 35888294 ~ 35888508 (+)
G1542292 LOC106573797 non-coding downstream 34965 35909153 ~ 35940375 (+)
G1542370 NA non-coding downstream 178690 36052878 ~ 36058125 (+)
G1542389 NA non-coding downstream 227047 36101235 ~ 36101463 (+)
G1542282 NA other upstream 1043 35870237 ~ 35870558 (+)
G1542262 NA other upstream 25405 35845814 ~ 35846196 (+)
G1542254 yo84 other upstream 34058 35836677 ~ 35837543 (+)
G1542253 NA other upstream 34984 35835836 ~ 35836617 (+)
G1542090 NA other upstream 325622 35529543 ~ 35606179 (+)
G1542324 LOC106588514 other downstream 87013 35961201 ~ 35963705 (+)
G1544007 NA other downstream 890106 36764294 ~ 36765233 (+)
G1544137 NA other downstream 988735 36862923 ~ 36863183 (+)
G1544455 NA other downstream 1181795 37055983 ~ 37056487 (+)

Expression


Co-expression Network