G1542292 (LOC106573797)


Basic Information

Item Value
gene id G1542292
gene name LOC106573797
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35909153 ~ 35940375 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1765036
aaaaaaaacaattttattcAAACAACTCAATTCATACACAACAGATGCATGTGTAATATCCATGAACAGAAATAAACCCCAAGAAAATGTACACTGTGATTCGCCAGCCAATTTGAATATGCCAATCCATTACATTTACAAGCTCAGAGAAAAGGTATGAACACTGCAAAGAAGCAGTAGCATTTGCCCAGCCTGTCATCTTAAATGACATAGAACGGCCTCACAAAACAAGTATGTGGGGAGAGAACAGTGTAGATCTAAACACAACTAGATATGCGAGGAGTGAGCCTAAAAAGCATAAGAACATTCCATACCAATACATCTCTTGTATAGAGGTGAGTAACAGCACTACGGGTCACAGTACTGTGCTTACTTTGCACTCAACATATTTCTAGAACACCGTGTTATCAGAATAACAACATATTCTCCAAATACAATGTACATTATAAATATAGTAATGATAATCAAATGTAAAAGAGATTTCCATGTAACAGAATAATAACCATAGTAGTAATACTAATTGAATAATACTTTTAGAATAAAACGTCACCCTAATAACAATATTCAAAATCTGTAATCATGGTCCTTCACGAGAAACAATACATTTTCTATATCTCTGAATAACTGTCATAGGAATTGAAAACAGAGAAGCAGATTAGAGATATGTCTAGAACTACGGTTCCAATTTTGCAATGGAgatcagaaagagagacagagagaaatagagggggtcTATTGGGGTAATAATAGACAAATTGAGGAGAGTAAAATGCTAGTGTACTGTATTATTAGGCatagatttttttctctctcctcaagAGACATTCGTTTTCAGTGCCACCATCAGTATTTCTGCTTCACTGATTCCGTCTCCGGTCATTTTAGTTCACGCTGTTACGCGGCAACCCTCTTGGCTCTCCAACACGAGGCAGCACACCTCATAAAGTGATAGGCTAGATTAGAGACCAACTGTGTTTGACGCAACCCTTATTATCAGATAAGACAATTTGGGAAAAGCTGAGAGAATTGCAATAATGGCATGCATTACAGAGTATTGTCTGTAGCATATAAGTTATTTGTCTACAACCTTTTACTCTGATAAACTATTAACTAAGATAATACTATTTTATTGGCTATTATAACCATTAATATTAACAAAACAGTATTTGCAAAAGCTGCAATTTCTCAAATTTACACTACACTAGCCCTATATATAATTACATAGCCTTTTTAATCTTGCGTCCGTCCAAGCACTTTCCATCAAATGTGTAGCTTTTTTCTTAGTACTGCAATACTTTATTCTATATGAAATTAGAAAATGGACCAACCACTTCCATTAGACAAGCAACTGTTGTTCTAAATGTGTCTATTTCTACAATTATACAATTGTCTATTGGAGTGTATAAAAACAATTCTAAGCCTGCTGACATTAGCCAAGGTGTACAAAGTAATTATGTCAGTTTCTGTGCTATGTCAACGCTGGGAAGTGCAAGTCATCACAAACGTCATCAAATgtaatgtaaactcagcaaaaaaagaaacgtccccttttcaggaccctgtctttcaaagatcatttgtaaaaatccaaacaacttcacagatcttcattgtaaagtgtttgaacactgtttcccctgcttgttcaatgaaccatgaacaattaaatgaacatgcacctgtggaacggtcgttaacacactaacagcttacatacggtagacaattaaggtcacagttatgaaaatttcGGAAACTaaagaaaaacaccaaaagaaagatgcccagcgtccctgctcatctgcgtgaacgtgccttaggcatgctgcaaggaggcatgaggactgcagatgtggccagggcaataaattgcaatgtccgtaccgggagaagcctaagacagctctacagggagacaggatggacagctgatcgtcctcacagtggcagaccccGTGTAACACTTGCACCcaatcggtacatccgaacatcacacctgccaggaaaggtacaggatggcaacaacaactgcccgagttacaccaggaacgcacaatccctccatcagtgctcagactgtccgcaataggctgagagaggctggactgcgggcttgtaggcctgttgtaaggcaggtcctcaccagacatcaccggcaacaacgt

Function

NR:

description
PREDICTED: uncharacterized protein LOC106584099, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1765036 True 2165 lncRNA 0.39 2 35909153 35940375

Neighbor

gene id symbol gene type direction distance location
LOC110496101 LOC106588519 coding upstream 790 35889566 ~ 35908363 (+)
LOC118941148 NA coding upstream 404517 35441143 ~ 35504636 (+)
LOC118941149 NA coding upstream 475212 35412771 ~ 35433941 (+)
tomm40l LOC106588243 coding upstream 560858 35335048 ~ 35348295 (+)
LOC110496082 LOC106588242 coding upstream 584489 35237754 ~ 35324664 (+)
LOC110496105 LOC106588516 coding downstream 30682 35971057 ~ 35974902 (+)
LOC110496106 LOC106588513 coding downstream 58824 35999199 ~ 36021773 (+)
LOC110496108 LOC106588512 coding downstream 83518 36023893 ~ 36068107 (+)
LOC110496111 LOC106588509 coding downstream 141734 36076661 ~ 36091606 (+)
LOC110496805 LOC106588507 coding downstream 207328 36147703 ~ 36158391 (+)
G1542296 NA non-coding upstream 20645 35888294 ~ 35888508 (+)
G1542295 NA non-coding upstream 21743 35887160 ~ 35887410 (+)
G1542283 NA non-coding upstream 34965 35871601 ~ 35874188 (+)
G1542281 NA non-coding upstream 40165 35868787 ~ 35868988 (+)
G1542280 NA non-coding upstream 40752 35868201 ~ 35868401 (+)
G1542370 NA non-coding downstream 112503 36052878 ~ 36058125 (+)
G1542389 NA non-coding downstream 160860 36101235 ~ 36101463 (+)
G1542391 NA non-coding downstream 163491 36103866 ~ 36104133 (+)
med30 LOC106570051 non-coding downstream 194719 36135094 ~ 36197363 (+)
G1542415 NA non-coding downstream 196874 36137249 ~ 36141322 (+)
G1542282 NA other upstream 38595 35870237 ~ 35870558 (+)
G1542262 NA other upstream 62957 35845814 ~ 35846196 (+)
G1542254 yo84 other upstream 71610 35836677 ~ 35837543 (+)
G1542253 NA other upstream 72536 35835836 ~ 35836617 (+)
G1542090 NA other upstream 363174 35529543 ~ 35606179 (+)
G1542324 LOC106588514 other downstream 20826 35961201 ~ 35963705 (+)
G1544007 NA other downstream 823919 36764294 ~ 36765233 (+)
G1544137 NA other downstream 922548 36862923 ~ 36863183 (+)
G1544455 NA other downstream 1115608 37055983 ~ 37056487 (+)

Expression


Co-expression Network