G1543428


Basic Information

Item Value
gene id G1543428
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 36192748 ~ 36193845 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1766269
CACAGCAGGATTTATAGTGCCATAGAATTCCTAAAGTTAATCAGACATTGTGATAATCATAAAGTCCAGAAGATACTGCGTTGACACGTAAACATCAAGCAGCCAACCACACATGAAAAGCAGAAGCACAAAACTCTTTCGTTTCACTACACTGTACCATGTTCATGGTGCAAAAGAGAAcagatctatgtgtgtgtgtgtgtggggggggggggggcTGGAGACCTCAATCTAGCTAGCAGTGATttcatttaaaaccttttttcaGCAATGTGCCTTATGATTTGTTTTATGGTATTTTTGCACAGATCTGTGCTCTTCTTCACCACAAACATGTCATCATGTATATCATTTGAGTTAAAATGGTTTAGGAATGTATAAACACATCTTGAAGGAAATCGAACTTCAAAACCACTCTAAATGGGTAAATGTAGTATTTGTCAAATATCTTAGGATATTAAATAAACTATAACTCTTAAAGTCCTCTTAATAACCATGTTGTAAGCGACAACTACACTCATCGGACAGTTTATTATGTACAATGAATGTACCGCCATTCAATCAGCAGCAACTGCATGATGCCATCGCGTCAGCATGTACTaaaatccctgtggaacgtttccaGACAACTTGTAGAATACGCCAAAGAATTCAggttgttctggaggcaaaggaggGTCCGACCTGTTACtaaatgggtgtacctaataaactgtacgGTGAGTGTATATCAGCATTTCTCCATCGCAAAACTTCTCTTTGTTCTTCTTTGCTTTCTTCACCCTCTTTTTCTGGGACTGAGGGTTGTATATTGCAAAAGCCTGCATTTCTAAAGTGCAGCGTCAGCATCAGCCTCAGAGGGACCCTGTCAGATATCCAGTTAACAACCATGTCTTccagtctgtggtgtgtgtgtgtatgtatgtatgcgcgCCTgcgcctgtgtgtctctctctctgtgtcgccgTGTTTGCCGTTCAACTCCTAACAGCCAGCATGGAGTTTATCTCCCAGATGAGGTTTCTGAGCTGGTCCATTATCTGCTTCAGTTGTTGGTTCTTCTGTTTGAG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1766269 True 1070 lncRNA 0.42 2 36192748 36193845

Neighbor

gene id symbol gene type direction distance location
LOC110496110 LOC106588509 coding downstream 91831 36084134 ~ 36100917 (-)
LOC110496109 LOC106588511 coding downstream 115449 36068180 ~ 36077299 (-)
LOC110496104 LOC106588515 coding downstream 211800 35975293 ~ 35980948 (-)
LOC110496103 LOC106588514 coding downstream 221031 35918293 ~ 35971717 (-)
LOC110496102 LOC106570058 coding downstream 274609 35912005 ~ 35918139 (-)
ext1b LOC103365060 coding upstream 2290 36196135 ~ 36308398 (-)
samd12 LOC106588503 coding upstream 142670 36336515 ~ 36461461 (-)
abrab LOC106570048 coding upstream 270725 36464570 ~ 36465358 (-)
angpt1 LOC106588502 coding upstream 304967 36498812 ~ 36560713 (-)
LOC110496117 LOC106612724 coding upstream 550533 36744378 ~ 36747323 (-)
G1543390 NA non-coding downstream 88244 36104279 ~ 36104504 (-)
G1543364 NA non-coding downstream 149589 36042400 ~ 36043159 (-)
G1543363 NA non-coding downstream 151209 36041134 ~ 36041539 (-)
G1543360 NA non-coding downstream 154488 36038049 ~ 36038260 (-)
G1543605 NA non-coding upstream 121994 36315839 ~ 36316263 (-)
G1543639 NA non-coding upstream 174087 36367932 ~ 36369697 (-)
G1543727 NA non-coding upstream 283288 36477133 ~ 36477477 (-)
G1543739 NA non-coding upstream 291945 36485790 ~ 36486155 (-)
G1543346 LOC106588513 other downstream 180062 36010987 ~ 36012686 (-)
G1543128 LOC106588245 other downstream 688591 35452618 ~ 35504157 (-)
LOC118941140 NA other downstream 695766 35492995 ~ 35499681 (-)
LOC110496085 NA other downstream 843086 35346895 ~ 35351655 (-)
LOC110496081 LOC106588241 other downstream 1012720 35151351 ~ 35203984 (-)
G1544806 NA other upstream 1107663 37301508 ~ 37302174 (-)
ppt1 LOC106588481 other upstream 1728310 37922153 ~ 37930745 (-)
LOC110496154 LOC106588291 other upstream 1953745 38121576 ~ 38152320 (-)
G1546053 NA other upstream 1971405 38165250 ~ 38214049 (-)
LOC110496167 LOC106588455 other upstream 2365804 38557052 ~ 38563365 (-)

Expression


Co-expression Network