G1543508


Basic Information

Item Value
gene id G1543508
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 36315403 ~ 36315649 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1766351
aagacataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacatatcaaaaactgaaaaattgggcgtgcaaaattattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgt

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1766351 True 247 lncRNA 0.34 1 36315403 36315649

Neighbor

gene id symbol gene type direction distance location
med30 LOC106570051 coding upstream 121553 36135094 ~ 36197363 (+)
LOC110496805 LOC106588507 coding upstream 157012 36147703 ~ 36158391 (+)
LOC110496111 LOC106588509 coding upstream 230637 36076661 ~ 36091606 (+)
LOC110496108 LOC106588512 coding upstream 247296 36023893 ~ 36068107 (+)
LOC110496106 LOC106588513 coding upstream 293630 35999199 ~ 36021773 (+)
ext1c LOC106588496 coding downstream 539479 36855128 ~ 36932244 (+)
trnaa-ugc-136 NA coding downstream 620809 36936458 ~ 36936527 (+)
LOC110496123 NA coding downstream 650730 36966379 ~ 36967984 (+)
LOC110496127 NA coding downstream 700111 37015760 ~ 37022862 (+)
LOC110496809 LOC106588491 coding downstream 816940 37132589 ~ 37141720 (+)
G1542415 NA non-coding upstream 174081 36137249 ~ 36141322 (+)
G1542391 NA non-coding upstream 211270 36103866 ~ 36104133 (+)
G1542389 NA non-coding upstream 213940 36101235 ~ 36101463 (+)
G1542370 NA non-coding upstream 257278 36052878 ~ 36058125 (+)
G1543510 NA non-coding downstream 1191 36316840 ~ 36367596 (+)
G1543519 NA non-coding downstream 18346 36333995 ~ 36354936 (+)
G1543598 NA non-coding downstream 146567 36462216 ~ 36462508 (+)
G1543711 LOC100194703 non-coding downstream 151354 36467003 ~ 36467227 (+)
G1543719 NA non-coding downstream 156459 36472108 ~ 36472745 (+)
G1542324 LOC106588514 other upstream 351698 35961201 ~ 35963705 (+)
G1542282 NA other upstream 444845 35870237 ~ 35870558 (+)
G1542262 NA other upstream 469207 35845814 ~ 35846196 (+)
G1542254 yo84 other upstream 477860 35836677 ~ 35837543 (+)
G1544007 NA other downstream 448645 36764294 ~ 36765233 (+)
G1544137 NA other downstream 547274 36862923 ~ 36863183 (+)
G1544455 NA other downstream 740334 37055983 ~ 37056487 (+)
LOC110496158 LOC106588463 other downstream 1877603 38193174 ~ 38204538 (+)
G1545533 LOC104965079 other downstream 2359378 38675027 ~ 38676004 (+)

Expression


Co-expression Network