G1543741


Basic Information

Item Value
gene id G1543741
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 36487474 ~ 36548667 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1766587
gtgtcgtCTGAAGAAGACGGGGTGAACCTCGGGAGGCttaagaaattcagcttgtcaccaaaagcactcacaaacttctgcagatgcacaatcaagagcatcctgtcggactgtatcactgcctggtacggcaactgctccgcccacaaccgtaaggctctccaaagggtagtgaggtctgcacaacgcatcaccgggggcaaactacctgccctccaggacacctgcaccactcgatgtcacaggaaggccataaagatcatcaagtacaacaaccacccgagccactgcctgttcaccccgctatcatccagaaggtgcatcaaagctgggaccgagagactgaaaaacagcttctatctcaaggccatcagactgttaaacagccaccac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1766587 True 393 lncRNA 0.53 2 36487474 36548667

Neighbor

gene id symbol gene type direction distance location
med30 LOC106570051 coding upstream 293624 36135094 ~ 36197363 (+)
LOC110496805 LOC106588507 coding upstream 329083 36147703 ~ 36158391 (+)
LOC110496111 LOC106588509 coding upstream 402708 36076661 ~ 36091606 (+)
LOC110496108 LOC106588512 coding upstream 419367 36023893 ~ 36068107 (+)
LOC110496106 LOC106588513 coding upstream 465701 35999199 ~ 36021773 (+)
ext1c LOC106588496 coding downstream 306461 36855128 ~ 36932244 (+)
trnaa-ugc-136 NA coding downstream 387791 36936458 ~ 36936527 (+)
LOC110496123 NA coding downstream 417712 36966379 ~ 36967984 (+)
LOC110496127 NA coding downstream 467093 37015760 ~ 37022862 (+)
LOC110496809 LOC106588491 coding downstream 583922 37132589 ~ 37141720 (+)
G1543735 NA non-coding upstream 5036 36482219 ~ 36482438 (+)
G1543719 NA non-coding upstream 14729 36472108 ~ 36472745 (+)
G1543711 LOC100194703 non-coding upstream 20247 36467003 ~ 36467227 (+)
G1543598 NA non-coding upstream 24966 36462216 ~ 36462508 (+)
G1543510 NA non-coding upstream 119878 36316840 ~ 36367596 (+)
G1543857 NA non-coding downstream 19396 36568063 ~ 36568277 (+)
G1544005 NA non-coding downstream 118962 36667629 ~ 36761238 (+)
G1544063 NA non-coding downstream 216594 36765261 ~ 36765613 (+)
G1544064 NA non-coding downstream 218121 36766788 ~ 36767006 (+)
G1544066 NA non-coding downstream 224056 36772723 ~ 36772947 (+)
G1542324 LOC106588514 other upstream 523769 35961201 ~ 35963705 (+)
G1542282 NA other upstream 616916 35870237 ~ 35870558 (+)
G1542262 NA other upstream 641278 35845814 ~ 35846196 (+)
G1542254 yo84 other upstream 649931 35836677 ~ 35837543 (+)
G1544007 NA other downstream 215627 36764294 ~ 36765233 (+)
G1544137 NA other downstream 314256 36862923 ~ 36863183 (+)
G1544455 NA other downstream 507316 37055983 ~ 37056487 (+)
LOC110496158 LOC106588463 other downstream 1644585 38193174 ~ 38204538 (+)
G1545533 LOC104965079 other downstream 2126360 38675027 ~ 38676004 (+)

Expression


Co-expression Network