G1544005


Basic Information

Item Value
gene id G1544005
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 36667629 ~ 36761238 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1766864
agagagagagagagcgagagagagagagaaagagattgcaGGCAGAAGCTGGAGGGTATAGCAGAAAggaggagggaatgagggaggagggggtgcAGGGAGGATAGCCTCATGTGGGTGGTTGGGAGTTCAGATGACGTCTACTTCACATTTGTGTACAGCTCAAAAGGCAACTTCACAACCTGTTGTACCTTTCATGCAGAGGTGACTGTTTCAATGAGAGAGGATGGCAACAACAGGTCAATCCCATGGTGTATTTCTCTGTCTTGCTCCTGGTAACCAACCTCACGCTCTCTGAGAATCGAGGATCTCCGGGCTAAACCATCGACACAGGGGAGACAAAAACACTGGCAACACAGTGGAGTGAGAAAAAGGGGAGAGGCCGACCGCTTacatggaggagatggagagaatgctGAGGATGTGAGGGAGGAGCAAAGGCAGATGGGACAGGCAGAGTAAACTAGGGGAAAACATTGCCCCAGAGCCAAATTTAACCCCAAACATCGTAAACACTCAGAGCTGAACGAGACCAGCAAAGAAGCAATGAGGTGAATGTGCAATATGAGAAGTCGTATGcaattaaattaaaatgttaaaaaaaacatCCACAAGACATACTGTAAAGTAAGTCTTGTGTTTTTCTTGAGCCCCTGACACATCTTAGCTTTTTAAGACCGATTACTGTGTTTTAACATGTATGCTGTATAAGAAATGGTTTTGACCAAAACAAACattgaaagaaaacaaacaagacgaacaaaaaaaataaatgaaacgcTCAAGTTCAACTAGATTGATTGACATTGTAACCTGAAGGGAGAACATTTACATTGACAGTTATCAGCGTTAATATGAAGATGAAAAAGCTTCATGAAAACTACAAAaggcatatatatatttttttttttttaacatctgagaaaaaaatataaatgaatgAAATACACCTTTTAAAGATCAACGCCAGACATGCTAGGACAATATTTTTTTATAGGATTGATACAGAATAATTATATTCAATTATTTCCACTTTTAAAACATTTCTTTACAAATACATACTGCTACAGTTAAATAGTAGTCAGTGACTAAAAACAGCTCCTTTGACAGAAGACAGATGCAATAGTTTTTTATCACCGtaacagatttttttaaatgtttttatatttttttgcctTTTCAAATAATACACAAAATGTTTAAATACACTGAGATATGCCATAAAATAAGCAATGCTTggcttttcattaaaaaaaaaaagaaaatgtcttAATTACAATACTCTATGCAAAAGCTTTCCTTTATGTCATTTTTCCTCaattaactttttattttttgttgttgttgttacagtaTATTTGAACAGGTTTTTTCTCGTTGTCATGGACTGCTATAAACCGTCACTCCGATTTGTCAATCTTCTCATGAGGGGGCGGGGCTTTATGCATAAAACTCCTTGGTTGGGGCCTTCTGATAGGCTGCCCCAGAGGGTTTCCTCTCTCCCAGGTCGTAGCTGCCCTCGTCCTTCTTCCTCATGCGGTAAAccaagaggaggatgaggaagatggCAAAGAGGAAGCCAATAACTCCACCAGC
>TU1766865
atatatatatttttttacatctgagaaaaaaatataaatgaatgAAATACACCTTTTAAAGATCAACGCCAGACATGCTAGGACAATATTTTTTTATAGGATTGATACAGAATAATTATATTCAATTATTTCCACTTTTAAAACATTTCTTTACAAATACATACTGCTACAGTTAAATAGTAGTCAGTGACTAAAAACAGCTCCTTTGACAGAAGACAGATGCAATAGTTTTTTATCACCGtaacagatttttttaaatgtttttatatttttttgcctTTTCAAATAATACACAAAATGTTTAAATACACTGAGATATGCCATAAAATAAGCAATGCTTggcttttcattaaaaaaaaaaagaaaatgtcttAATTACAATACTCTATGCAAAAGCTTTCCTTTATGTCATTTTTCCTCaattaactttttattttttgttgttgttgttacagtaTATTTGAACAGGTTTTTTCTCGTTGTCATGGACTGCTATAAACCGTCACTCCGATTTGTCAATCTTCTCATGAGGGGGCGGGGCTTTATGCATAAAACTCCTTGGTTGGGGCCTTCTGATAGGCTGCCCCAGAGGGTTTCCTCTCTCCCAGGTCGTAGCTGCCCTCGTCCTTCTTCCTCATGCGGTAAAccaagaggaggatgaggaagatggCAAAGAGGAAGCCAATAACTCCACCAGC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1766864 False 1596 lncRNA 0.39 2 36667629 36761238
TU1766865 True 698 lncRNA 0.34 2 36705998 36761238

Neighbor

gene id symbol gene type direction distance location
med30 LOC106570051 coding upstream 473779 36135094 ~ 36197363 (+)
LOC110496805 LOC106588507 coding upstream 509238 36147703 ~ 36158391 (+)
LOC110496111 LOC106588509 coding upstream 582863 36076661 ~ 36091606 (+)
LOC110496108 LOC106588512 coding upstream 599522 36023893 ~ 36068107 (+)
LOC110496106 LOC106588513 coding upstream 645856 35999199 ~ 36021773 (+)
ext1c LOC106588496 coding downstream 93890 36855128 ~ 36932244 (+)
trnaa-ugc-136 NA coding downstream 175220 36936458 ~ 36936527 (+)
LOC110496123 NA coding downstream 205141 36966379 ~ 36967984 (+)
LOC110496127 NA coding downstream 254522 37015760 ~ 37022862 (+)
LOC110496809 LOC106588491 coding downstream 371351 37132589 ~ 37141720 (+)
G1543857 NA non-coding upstream 99352 36568063 ~ 36568277 (+)
G1543741 NA non-coding upstream 118962 36487474 ~ 36548667 (+)
G1543735 NA non-coding upstream 185191 36482219 ~ 36482438 (+)
G1543719 NA non-coding upstream 194884 36472108 ~ 36472745 (+)
G1543711 LOC100194703 non-coding upstream 200402 36467003 ~ 36467227 (+)
G1544063 NA non-coding downstream 4023 36765261 ~ 36765613 (+)
G1544064 NA non-coding downstream 5550 36766788 ~ 36767006 (+)
G1544066 NA non-coding downstream 11485 36772723 ~ 36772947 (+)
G1544073 NA non-coding downstream 25465 36786703 ~ 36786985 (+)
G1544074 NA non-coding downstream 26179 36787417 ~ 36787650 (+)
G1542324 LOC106588514 other upstream 703924 35961201 ~ 35963705 (+)
G1542282 NA other upstream 797071 35870237 ~ 35870558 (+)
G1542262 NA other upstream 821433 35845814 ~ 35846196 (+)
G1542254 yo84 other upstream 830086 35836677 ~ 35837543 (+)
G1544007 NA other downstream 3056 36764294 ~ 36765233 (+)
G1544137 NA other downstream 101685 36862923 ~ 36863183 (+)
G1544455 NA other downstream 294745 37055983 ~ 37056487 (+)
LOC110496158 LOC106588463 other downstream 1432014 38193174 ~ 38204538 (+)
G1545533 LOC104965079 other downstream 1913789 38675027 ~ 38676004 (+)

Expression


Co-expression Network