G1544311 (LOC106588496)


Basic Information

Item Value
gene id G1544311
gene name LOC106588496
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 36864877 ~ 36866114 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1767190
GCGGGCATCTTTGTGTTTCTCCCAGTCCTTCCCGTGACGGCATGTGGTGAGGGACACGATGTCCTTCCCGTTATGGATGTGATGCAGGGCGTTACGGGTGTCCGACCCGATGCCCGTTAAATACCGCTTCCCTTTGAACATCAATAGGTACTTCCTGCGTGGGGGCACTGTGTTTCGCACCAACCAGCCCCTCTCGCCCCCCTTCTGGGGGTGCTCCTTGGAGAACAGGGGGATGGAGACGTCGAACCCGGGCCTGAAGTGTTCCGTGTTGAGGCTGGCTTTAGCCAGGATGGCCTGGCCAATATTGAAGCCCAGGTCCTCGTTGTAGTTGGGCCAGGTCCCCGAGTACAGATTAAAGACAAGGTGGTTCCGTCCCTCGTTCCAGAGCGGGTAACCTTTGATACGATCGTCCAGGTTGGGCACGAACTGCCCCGAGAGCTGATCTCGGTCCAGAGTGTCAATCCCCAAAACGAACAGACACGCCTCGCGAGGGTCCGTGGTGTAGTACCGCGACTCGCCTATAGACATCAGTATCTTACGATAGCTCTCCGATACGCGCTCGCCCTTCTCCGACGGGTAGACGTATACTCTAAACCCGTCCCGCCCTCTACGTCGACATCTCGTAAAGTCGAAGCAGGTCTCCATGCGGCAGCGACTTTCTTTATAGATGCCCGTCCAGGCTTGGTGACGCTGGTGGGGGGACTCAGCGGAACCCGGCCCCGTCTGGAGTTCCTCCAGCTGGGCATAGCCCGGCAGGAAGGCCCGGTCGGTCCAGTTGGGCCAGGGACGCACCACCTCACCCCTTGGCCGCCCCAGCAGCTTGAAGAGACGGACCTGGACCCCGCCTCCCCAGTAGAAGAGCAGCAGCCAACAGCAAGCACACAGCCCCAGCAGGACATACTTCTTACGCGCCTGCATGGGGCCCAGAGTGCCTCTCGTTCTCTTCCTctatcactctcctctctttttctctctctgcccctcagtTCTAAGCCTCACAGCGGTGGGCGAGTTATTTCGAAAGGTCTAACAAGGAGGGTCCAATATAGAACGGTGTGGTAACTTGGACATCGTCACTTCCAAGTCTGGTCCCATCCAGTTTGAGCCCATTGAGGATAAATAAATGGATGTTGAAGCCACTCTCTCCGGTTTCTCTCGCTCAGATTCGGGTGCCGTTAGCCTGTCTCTTGCTAGACCGTCTCTGTGGTGCGTGTGTGCACTTCCTGCACTGCCCGATG

Function

NR:

description
exostosin-1c-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1767190 True 1238 lncRNA 0.58 1 36864877 36866114

Neighbor

gene id symbol gene type direction distance location
LOC110496120 LOC106588498 coding downstream 29817 36823864 ~ 36835060 (-)
LOC110496119 ppp1r36 coding downstream 51332 36800516 ~ 36813545 (-)
sdc2 LOC106570046 coding downstream 71480 36759185 ~ 36793397 (-)
LOC110496117 LOC106612724 coding downstream 117554 36744378 ~ 36747323 (-)
angpt1 LOC106588502 coding downstream 304164 36498812 ~ 36560713 (-)
zgc:114119 LOC106588497 coding upstream 65186 36931300 ~ 36939648 (-)
zgc:101785 LOC106588494 coding upstream 108882 36974996 ~ 36989677 (-)
LOC110496124 LOC106588493 coding upstream 124127 36990241 ~ 37056749 (-)
prdm1b LOC106588492 coding upstream 210913 37077027 ~ 37090104 (-)
LOC110496131 borea coding upstream 872727 37738841 ~ 37744121 (-)
G1544309 NA non-coding downstream 1689 36862963 ~ 36863188 (-)
G1544308 NA non-coding downstream 2031 36862312 ~ 36862846 (-)
G1544304 NA non-coding downstream 6065 36858571 ~ 36858812 (-)
G1544302 NA non-coding downstream 7523 36856847 ~ 36857354 (-)
G1544292 NA non-coding downstream 16453 36848197 ~ 36848424 (-)
G1544315 NA non-coding upstream 4219 36870333 ~ 36870567 (-)
G1544317 NA non-coding upstream 5315 36871429 ~ 36871674 (-)
G1544318 NA non-coding upstream 5915 36872029 ~ 36872258 (-)
G1544320 NA non-coding upstream 7410 36873524 ~ 36873792 (-)
G1544326 NA non-coding upstream 14554 36880668 ~ 36939089 (-)
G1543346 LOC106588513 other downstream 852191 36010987 ~ 36012686 (-)
G1543128 LOC106588245 other downstream 1360720 35452618 ~ 35504157 (-)
LOC118941140 NA other downstream 1367895 35492995 ~ 35499681 (-)
LOC110496085 NA other downstream 1515215 35346895 ~ 35351655 (-)
LOC110496081 LOC106588241 other downstream 1684849 35151351 ~ 35203984 (-)
G1544806 NA other upstream 435394 37301508 ~ 37302174 (-)
ppt1 LOC106588481 other upstream 1056041 37922153 ~ 37930745 (-)
LOC110496154 LOC106588291 other upstream 1281476 38121576 ~ 38152320 (-)
G1546053 NA other upstream 1299136 38165250 ~ 38214049 (-)
LOC110496167 LOC106588455 other upstream 1693535 38557052 ~ 38563365 (-)

Expression


Co-expression Network