G1544326


Basic Information

Item Value
gene id G1544326
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 36880668 ~ 36939089 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1767207
TTTTGAATTTGTGAGATTATTTTTAATGTGATTTGAAAGTACAGggatatatacagtaccacatttgagaatcgattcacgtgtAGATGgaagtatttggctgttttggcttcCAGAGCCAATTCTCCTTTAAACAGAACATGCAAGGTCCTTGGACCATAATGAGTAACATTAAGCTCATTTAGTCCATTATTGGGCTAGCAAATTAGTAGCTAGCATAACAAGGGTGCTGTTAATTAGATTGAcatagtcctctttaaagtgaactctgtgGTAAAAACAAACGAAAAGCTAAAGAGTTGTTCTCTTTGTATTCAAGCTGGCCTTGCCTTTAAATGAGGACTCAACTCTTTTGCCAGTTCACTTCACCTATTTTGTGATCCGAGTCATCTTTGCATTCACATTGCTCTGTTTAGAAAGGAACCAAGATCTTTTCCCAACATTCACTCAATACACTGGGTTTTTTACAAAGTGCAGGACAAGCTATTCCATCAGAATGTGTTATTGGACAGCTAGCCATACCATATGCCTACTTACATTTTGAAAACTAATCGATTGCATTTGCTTAAGATGAGTCATAATAATTGTAATCAGAAGATACTTTTAACTTGTAAATATTATTGGTAACAGATTACATAATGCTGTAATTGAAAATTGTACATCCAATGTAGGCTACCATCCCTTTAAGGGTACAAAATCCATTTTAGCTCTATGTTGTGATTCTCACCAAATAGGTTGTCTTTTCACACTATTCAACCCCCACAATTGAATAAGCAGTTTATGAAGCTCTCTTAGCCTATAGATCACATATTGCAAACAAATCATCTGAACTGAAAACTCCTTGCATTTTAGAATTTCTGTGCATCCTTGACTATTTACATAATTACTAATCATGTTTTTTCTGCAATACTGCTcattagaggtcaaccgattatgatttttcaataccggtaccggttattggaggacccaaaaggccgataccgattaattggcccatttttttaaacatttattttttatttgtaataatgacaattacaacaatattgaatgaacacttattttaacttaatataatacaccaataaaatcaattttgcctcaagtaaataatgaaacatgttcaatttggtttaaataatgcaaaaccaaagtgttggagaagaaagtaaaagtgcaatatgtgctatgtaagaaagctaatgtttaagttccttgctcagaacatgagaacatatgaaagctggtggttccttttaacatgagtcttcaatattcccaggtaagaagttttaggttgtagttattataggaattctaTAACTTTtttttccctctataccatttgtatttcattgacctttgactattagatgttcttataggcactttagtattgctcgaaccagcaacacaacgacaacagccaccatcgaagcagtgttacccatgcagagcaaggggaacaactactagaaggctcagagcgagtgacgtttgaaacgctattagcgcacgctaactagctagcaatttcacttcagttacaccagcctcatctcaggagttgatagggttgaagtcataaacagagcaatgcttgacgcacaacgaagagctgctggcaaaacgcacgaaaatgctgtttgaattaatgtttacgcgcctgcttctgcctaccaccgctcaagTCAAATACTtatatgctcagtcagattatatgcaatgcaggacacgctagataatatctagtaagatcatcaaccatgtgtagttaactagtgattatgatttattgttttttataagagaagtttaattctagctagcaacttaccttggcttactgcattcgcataaaaGGCAGTCTCcatgtggagtgcaacgagacgttattgcgttggactagttaactgtaaggttgcaagattggatcccccg

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1767207 True 1944 lncRNA 0.36 2 36880668 36939089

Neighbor

gene id symbol gene type direction distance location
LOC110496120 LOC106588498 coding downstream 45608 36823864 ~ 36835060 (-)
LOC110496119 ppp1r36 coding downstream 67123 36800516 ~ 36813545 (-)
sdc2 LOC106570046 coding downstream 87271 36759185 ~ 36793397 (-)
LOC110496117 LOC106612724 coding downstream 133345 36744378 ~ 36747323 (-)
angpt1 LOC106588502 coding downstream 319955 36498812 ~ 36560713 (-)
zgc:101785 LOC106588494 coding upstream 35907 36974996 ~ 36989677 (-)
LOC110496124 LOC106588493 coding upstream 51152 36990241 ~ 37056749 (-)
prdm1b LOC106588492 coding upstream 137938 37077027 ~ 37090104 (-)
LOC110496131 borea coding upstream 799752 37738841 ~ 37744121 (-)
LOC110496132 LOC106588485 coding upstream 815928 37755017 ~ 37757210 (-)
G1544320 NA non-coding downstream 6876 36873524 ~ 36873792 (-)
G1544318 NA non-coding downstream 8410 36872029 ~ 36872258 (-)
G1544317 NA non-coding downstream 8994 36871429 ~ 36871674 (-)
G1544315 NA non-coding downstream 10101 36870333 ~ 36870567 (-)
G1544311 LOC106588496 non-coding downstream 14554 36864877 ~ 36866114 (-)
G1544372 NA non-coding upstream 6447 36945536 ~ 36945874 (-)
G1544375 NA non-coding upstream 8637 36947726 ~ 36947955 (-)
G1544378 NA non-coding upstream 10497 36949586 ~ 36949833 (-)
G1544403 NA non-coding upstream 25884 36964973 ~ 36965232 (-)
G1544405 NA non-coding upstream 26588 36965677 ~ 36966001 (-)
G1543346 LOC106588513 other downstream 867982 36010987 ~ 36012686 (-)
G1543128 LOC106588245 other downstream 1376511 35452618 ~ 35504157 (-)
LOC118941140 NA other downstream 1383686 35492995 ~ 35499681 (-)
LOC110496085 NA other downstream 1531006 35346895 ~ 35351655 (-)
LOC110496081 LOC106588241 other downstream 1700640 35151351 ~ 35203984 (-)
G1544806 NA other upstream 362419 37301508 ~ 37302174 (-)
ppt1 LOC106588481 other upstream 983066 37922153 ~ 37930745 (-)
LOC110496154 LOC106588291 other upstream 1208501 38121576 ~ 38152320 (-)
G1546053 NA other upstream 1226161 38165250 ~ 38214049 (-)
LOC110496167 LOC106588455 other upstream 1620560 38557052 ~ 38563365 (-)

Expression


Co-expression Network