G1544600


Basic Information

Item Value
gene id G1544600
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 37018130 ~ 37022860 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1767512
CTAGCCTCTGCTTTAatcaaatcaacaacaaaaaattaaatGTCAAATGCACCgaataccgtgaaatgcttacttacaaacccttaaccgaCAATGCAGTTAACGAAATACAGTGAAgaaaatatacaaataaaaaagtaacacattaaaataacaataatgaggctatatacagggggtaccggtaccgagtcagtgtgcaggggtacaggttagtcgaggtaatttgtacatgtaggtagggtgaagtgactatgcatagataataaacagcgagtagcagcagtgtaaaaacaaaaggaggtagaagctgttgagccttttggacctagacttggcgctccggtaccgcttgctgtgcggtagcagagagaacagtcaatgactttggtgactggagtctAAACAATTTTTgggggcattcctctgacaccacctagtacataggtcctggatggtagagTATGTTGCACTCTGTCCAACATCTCTTTTATGAACCAGGAAGTCCTGTCACAATCTGCCAATAAGACAAAACTTCCACCTCTTGTATGTGATTGGAGCTCTGATGGACAGACATGTTAACACTAGGTGGAAGCTAAGCTAAAGGGAATAACCTTCAATGTGTAAAGTGTTTTGGACTCGGAGGCCACCTTGCTACAGGGATTCGGGAGGGCCAAATGTCTGCTGACACTGTGTCATCTGGTGCTGTCATTGGCGCCATCCATTCTTTGTCTACGAACCTACTTAGATTTTCTATGACATTCAATTTTCTTTCATGAATACCAGGATGGAAGCAATAATCAGAAACATGCCAAAGGTAGACTTTCAAGTCAACAATTGACAACAAATGCACATTTTAAGGACATAGCTTGATTAGCATACTGCGCCCCATACATTATAGTTTTACCCATGGGCAATGATTGGTGTTCACCACATGAGGGCAACACTTTCAAAAGAGATATGTCAAACCAACATTTCTTTACCTGTAATTAAAAAATACCATTTTGGCCTGTGATGAATACCTCCGTTATAGGAGGCACACTCCCGCAGTCAGCCGTGAGTGACAAGTGAAAGAGATTCTCCGGTACTTTGGTATACTTATTAGCCAGTAGATGTGAATGTAGCAATCACGTGCCACAAGTGGTCCCCGAAATAGATGTCTCTGCTGCGTCCACTGAGCCATTGGGCCCGCCCTGTAATCTCATTGGATAACGCTGGGCAGGCcacttgctagctgtcactcaaatgcgCAGGGCGGCAACTCATTGGCTAGAACACTAATTTCTAGGGGGCTGGCCCACTTGGGGGGAAATTTAGAGAACATTGCACGGCACAGCTTTAAGAAAACAGTTTCTTTCAAATTAAggatttcgtggctaattgaggtaaaatgGTAATTccgctcatagattatgcatgtgtaaactacacattgacacatcagCCCAAAGCAGGatgtttaaaaaatacatttttaatcgCCAAAATACCGGAGATTGTACATCAGTAATGCCGGCAAAATGAATTATCTTATGGGAACTATACATCCCAGTGTGTTTAGCTACAGGAGTAGCCTGATTTTAACATCTCTTAGTGATTGATGCATTGCTATTAAAATGTAAGAACAAGCAAAGAGTGTGTGTGGATATTCGTGTTCTTCCTTAGACCGCAAAGCCTTCCTCCACCTTACCCTTCAGACAGCATAGAGGGGGGGAAAAAGTGACAAAAAATAAGTTGATTAGTCGTGTACACATTTTAGATGGCGTTTTAGCAGTGCAATGAAATTCTTCTGTTACtggctcctaacaatgcagtctAATGTCAAACAATTCTAATGTGAAAAAAAGAAAAGAGGAGAAAAGAACTGATGGACAAATCCAATGaacaacccaaatagcactgtagCAGTATCAAAATGCCATCTATACATATGTACACAAGGGGAATTTACACAAgagaaactacactgaacaaaaatataaacctcaagtgtaaagtgttggtcccatatttcatgagctaaaataaaagtttccagaaatgttccatccactcaaaaagcttatttctcttacaTTTTgtccacacatttgtttacatgagcatttttcctttgccaaaataatagacctacctgacaggtgtggcatatcaaaaagctgatttaaacagaatgatcattacacaggttcaccatGTGCTGGGaacagtaaaaggccactctaaaatgtgcagtttgtcacacaacacaatgccataaatgtctaaagttttgagggagtgtgcagtaggcatgctgactgcaggaatgtccaccagagctgttgccagagaatttaatgttaatttctctaccataagcagcctccaacatcattttagagaatttggcagtacgtccaaccggcctcacaaccgcagaccacatgtaaggagttgtgtgggtgagcggtttgtcAACGGCatgaacagagagccccatgattgcggtggggttatggtaaggttggggttatggtatgggcaggcttaagctacggacaacaaacacaattacattttgtcGATTAGCAatatgaatgcacagagataccgtgatgagatcctaaGGCCTACTGTCGtgacattcatccgccgccatcgccccatgtttcagcatgataatgcacaaccccatgtcgcaaggatctgtacacaattcagggaagctgaaaatgtcccagttcttccatggcccaatgagcatgtttgggatgtgaATGACGGCATGTTCTAGTTCCCGTcaatattcagcaacttcacacagccattgaagaggagtgggataacATTTCCCTGGCCACAGTCAACAACCTGATTAACTCTATGCGAAAGAAATGTCGTGCTGCATGAAGCAAATGATGGTCACAACAGATGGTTCTGGttctgatccacgtccctacttaaaaaaataataattatgatatatgtgaccaacagatgcatatctgtattcccagtcatgtgaaatccagagattagggcctaatttatttatttcaatgacTGAtatccttaaatgaactgtaactcagtaaaatcttaggtGGTGTTATAttcccgacaggatgctctcaatggtgcatctgtagaagttcatGAGTGTCTTAGGGGccatgccaaatttcttcagccacaGGAGGTTGTAGAGGCACTGTTGCACTTCCTCACCACAGTGCCGGTGTGGTGAGACCATTTCAGGtcatcagtgatgtgtacaccaaggaacttcaaCCTTTTGATCCTATCTACTGCGTCCCCGTCGATGACGATGCGGGCATGCTCCctcttctgtctcctgtagtccacaataagaTCCTTCCTTTTTATTGACGTTGAGGGACAGGTTATTTTCCTGGGACCACTCCGCCAGCACAGGTGtgtcagcatgtgtgtgtgtgaattcccAATTTCTCACGTTGGAGCAGATTATTGTGAGTTTGTGTTGATTTGACGTTTTAAAGGGCGACTGCACTTCTTGATTCTGCCTTATTTTAGATTTGGTTCTGTAAGAAATGCTAGCAGCCATGATTGAATTCAAACGGGAAGAGTGTGGTGTGAAGAGGTGTGAAGAGTTaaccaaatgattagccaagttAGCCTCAGCCGGCTGGTGTGCGACTGTGGCGAAGTTGACCTATTGGCCTTTTAAAATGTAGTCacatgtacattgtgtaatttcctgatggtccctaactagccccataggGATGTCAAACCAAATTGATCATGGGTATTACGATCAGGTCGCGTGCACTGCGCTCCGAACTGATGATTACTTGGGTGCTGCCGGCTGAGGGCATGTGGGCAGGATTGAAATAAACCCAACTCATAGGAAACTGTTATGTTCCCCTTCATTCCATAACATACAATCTTTTCCTATCATCTCACAAATCTTAGTTTTGGacaagactgactttatgaccaaaatgatcgTATTTACACATGAGACTAAACATTGACACTGGAATAAATATTTGACACAGGCCatttaagaatatatatatataaaaaaaaacgagAAGTTGCTTTTTAGGGGCAGTCGCTCTTTTAAAGCTGCATGTTCCAGCAGAGGTGCGGTGGTATGTGGTAGCTAAGCCCTTCTGTCTTCCCCGGGGCCAGGTGTTGTGATGAGTGGATCTTCCTGCTGAAACGGACAGATGGAGAAGTGCCATAGCACACTACCAAGAAAAACACTGGAAAGAAATTGGATAAAGAAGTAGTTTAGAAAAAGAAATTGGCTGCTACGCTGTTGTAGTGATGTGCTGTCAAATCTTTCCAAAATGGTAGTATGAAGTCAGGGAGGAGTTGTGAGGATAGATCAACTCCATTTAACTTAGGTAAACATTTGTTGTCAACTCATAAAAGGACTGCTGTTTAGTCTGGAACACATAGATAGGACACTTACGTCTGACTTGGCACCCCACTTGTCTCTAGTAGTTTGCATATAGAACACTTTATGTTGAACCTGTCTATTCGTACCTgtccctggagagagaccctACATGTTTGAACAGACCCAACACATTTTTGTTATGGACACGAAATCAAACGCTTCGTCTGATCGTAAGTCAGTGGTTCTCATGGTTCAGTGGGTTAGAGCAGGTGGTTTTTCTAACTATACCAGAGCTAACTT

Function

NR:

description
histone-lysine N-methyltransferase SETMAR-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1767512 True 4675 lncRNA 0.42 3 37018130 37022860

Neighbor

gene id symbol gene type direction distance location
zgc:101785 LOC106588494 coding downstream 28453 36974996 ~ 36989677 (-)
zgc:114119 LOC106588497 coding downstream 78482 36931300 ~ 36939648 (-)
LOC110496120 LOC106588498 coding downstream 183070 36823864 ~ 36835060 (-)
LOC110496119 ppp1r36 coding downstream 204585 36800516 ~ 36813545 (-)
sdc2 LOC106570046 coding downstream 224733 36759185 ~ 36793397 (-)
prdm1b LOC106588492 coding upstream 54167 37077027 ~ 37090104 (-)
LOC110496131 borea coding upstream 715981 37738841 ~ 37744121 (-)
LOC110496132 LOC106588485 coding upstream 732157 37755017 ~ 37757210 (-)
LOC110496134 LOC106511154 coding upstream 735928 37758788 ~ 37796944 (-)
LOC118941234 NA coding upstream 758509 37781369 ~ 37781447 (-)
G1544592 NA non-coding downstream 49486 36968223 ~ 36968644 (-)
G1544405 NA non-coding downstream 52129 36965677 ~ 36966001 (-)
G1544403 NA non-coding downstream 52898 36964973 ~ 36965232 (-)
G1544378 NA non-coding downstream 68297 36949586 ~ 36949833 (-)
G1544375 NA non-coding downstream 70175 36947726 ~ 36947955 (-)
G1544758 NA non-coding upstream 240582 37263442 ~ 37263860 (-)
G1544764 NA non-coding upstream 244290 37267150 ~ 37267554 (-)
G1544796 NA non-coding upstream 274363 37297223 ~ 37297532 (-)
G1544799 NA non-coding upstream 275182 37298042 ~ 37298308 (-)
G1543346 LOC106588513 other downstream 1005444 36010987 ~ 36012686 (-)
G1543128 LOC106588245 other downstream 1513973 35452618 ~ 35504157 (-)
LOC118941140 NA other downstream 1521148 35492995 ~ 35499681 (-)
LOC110496085 NA other downstream 1668468 35346895 ~ 35351655 (-)
LOC110496081 LOC106588241 other downstream 1838102 35151351 ~ 35203984 (-)
G1544806 NA other upstream 278648 37301508 ~ 37302174 (-)
ppt1 LOC106588481 other upstream 899295 37922153 ~ 37930745 (-)
LOC110496154 LOC106588291 other upstream 1124730 38121576 ~ 38152320 (-)
G1546053 NA other upstream 1142390 38165250 ~ 38214049 (-)
LOC110496167 LOC106588455 other upstream 1536789 38557052 ~ 38563365 (-)

Expression


Co-expression Network