G1545807 (LOC107592052)


Basic Information

Item Value
gene id G1545807
gene name LOC107592052
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 37706273 ~ 37706738 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1768809
tcgaaatgtcatcaattttagaataaggctgtaacgtgacaaaatgtggaaaaggggaaagggtctgaatactttccaaatgcagtgTAAGTGCGTACAGGCTAGGGGTTCATTTGTGATTTAGGTAACTAGCTCACCGCTGGTGATGACCCCCTCTAGACGGACAATGTTGGAGTGGTCAAACTGTCCCAGTATCCCTGCCTCGCTGAGGAAGGAGCGCCTCTGTTTCTCTGAGCAGCCGGCCCTCAGTGCCTTGATGGCCACTGGAAGCTCCCGCTTACTGGGCAGCTTGAGACAGCCACGACACACCTCCCCAAAGTCACCTGCAggtggagacacagagagagggttagatAGTGGACTACAGTAATGGTTTACCAGAGAGAGTTGGGGGTGAgtgagtgttagagagagagagcagaggaaagagagagagagagagcagaggaaagagagagagagagag

Function

NR:

description
PREDICTED: ephrin type-A receptor 5-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1768809 True 466 lncRNA 0.51 1 37706273 37706738

Neighbor

gene id symbol gene type direction distance location
prdm1b LOC106588492 coding downstream 616171 37077027 ~ 37090104 (-)
LOC110496124 LOC106588493 coding downstream 649524 36990241 ~ 37056749 (-)
zgc:101785 LOC106588494 coding downstream 716596 36974996 ~ 36989677 (-)
zgc:114119 LOC106588497 coding downstream 766625 36931300 ~ 36939648 (-)
LOC110496120 LOC106588498 coding downstream 871213 36823864 ~ 36835060 (-)
LOC110496131 borea coding upstream 32103 37738841 ~ 37744121 (-)
LOC110496132 LOC106588485 coding upstream 48279 37755017 ~ 37757210 (-)
LOC110496134 LOC106511154 coding upstream 52050 37758788 ~ 37796944 (-)
LOC118941234 NA coding upstream 74631 37781369 ~ 37781447 (-)
LOC110496137 LOC106570035 coding upstream 137298 37844036 ~ 37854732 (-)
G1545805 NA non-coding downstream 25728 37679979 ~ 37680545 (-)
G1545802 LOC106588469 non-coding downstream 33587 37672361 ~ 37672686 (-)
G1545801 NA non-coding downstream 34919 37671136 ~ 37671354 (-)
G1545798 NA non-coding downstream 39794 37666261 ~ 37666479 (-)
G1545789 NA non-coding downstream 75996 37629439 ~ 37630277 (-)
G1545809 NA non-coding upstream 2854 37709592 ~ 37709962 (-)
G1545810 NA non-coding upstream 5266 37712004 ~ 37712224 (-)
G1545811 LOC106588469 non-coding upstream 5680 37712418 ~ 37712884 (-)
G1545820 NA non-coding upstream 11575 37718313 ~ 37720538 (-)
G1545864 NA non-coding upstream 106005 37812743 ~ 37814324 (-)
G1544806 NA other downstream 404099 37301508 ~ 37302174 (-)
G1543346 LOC106588513 other downstream 1693587 36010987 ~ 36012686 (-)
G1543128 LOC106588245 other downstream 2202116 35452618 ~ 35504157 (-)
LOC118941140 NA other downstream 2209291 35492995 ~ 35499681 (-)
LOC110496085 NA other downstream 2356611 35346895 ~ 35351655 (-)
ppt1 LOC106588481 other upstream 215417 37922153 ~ 37930745 (-)
LOC110496154 LOC106588291 other upstream 440852 38121576 ~ 38152320 (-)
G1546053 NA other upstream 458512 38165250 ~ 38214049 (-)
LOC110496167 LOC106588455 other upstream 852911 38557052 ~ 38563365 (-)
LOC110496175 LOC104924380 other upstream 967703 38674378 ~ 38676029 (-)

Expression


Co-expression Network