G1545820


Basic Information

Item Value
gene id G1545820
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 37718313 ~ 37720538 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1768849
ggggggacaacaacTGAGTTAAGTTGCTAGCGAAAGGTCTATTTTGGTGTCTGCGTATACAGGGGTGGTGAGACTTTCTAGATATGTGCATGTGTGAATCTATagggctgcgtttacacaggcagcccaattctgatctttctCCACTTCTTGGTCTTTCGACCGATCAGATTAGCTCTTTCTACAATAAATGGGCAGAATATCAGAATTGTGCCTTTTGTAAACGCAGCCGAGAAGTATATTTTGGGTTTATATACAGTAATGTTAAGGCAAAACAGCTACAAAGAGAGAGTAtgtagggaagagaggaggacataCACTGGTAGTCCTTTCATACCAGATACCTCACTATTACAATAACCCATCTACGAACCAAACGGAACCAATAAAACATCtactgtgtagctagctacatgagTATGATAGAAATCAAATAATTCCCCAAAACGTGTCAACTACGATTAAATGTTACCGTTTTTGTAAAATACATAATACTGACAAATGGAAGGGCTTGTAGATGCAGTGGGGGGTTGTGGGTCCTATGTCAGCTTGAgttgctgtccccccccccccccccccccaaaataaataaataaataaatgagatcACTCTTACGACATTCTGAAATACTGCAATACTGTTTCTATAATGCAACACATCGATACCGTACATCCAGCGACACTGGACTCAAAATGTATAAGTCCTATATCAACTACTGGTAATTTGTTAACAGTATCCACATGATTCAATACCCCTGTCTATGAGAAGAAAACAGTCAACATTCTATAGTGTAAGTCCTCTTCATAATACCTTGTTCAGTACAGGACACCATTATTCAGTAACAGAATCCCTCAAACTGTAAAAAACAATACAATATTTCATGATTTACACTGAAACCAGAGGACATGTGCTTGGCAGCATCCTTAAACACAAAATGTAATTGATTATTTATTCAATCAAGTATGTCTATTTTGACCCTCGTAACCTCTTCCCGTCAGGAGGTTGTGTGAGAGTCTGTAAACTgtaaacgcagaaataaaaatgaaTACATATTATATGCTGTATGTCAGCTTGAGACTTGACCTTTATTCTTAACAGTGCAATATACCCTTGTAGTGAAAATGCTTTTTAGATGGGAGAAATATATTAGCGAGACGCTACATGACACACCACTGACATCCCGGCTAAGGGACATTAGCCATTCCACACAGGGAGAGCAGAGACATTTCATGGAAAAATGTTAGACAAAAATATCAATTGTGTAACAGACGAAATAGGAATGAACAATCAAATACACGTAAATCCATTGTTTTGATTTACACAAATTCCTAGTTGTTTTTAAATCAGTCGTTTTTTCCTGAATGTACGTTTTTTCCAGCCTCATGATTGTTCGGGCCAAGAGAAGACACAGCCTGGGTTCCGCCCACACCGTGGGAACCTGTCACTTGAACACACCCCTGGGATAGGAGGTTTTTAACCACTGAACTGAGACCAGATTTACAATGTCAACTCTGCTCGACAGACAGCACTTTCTCCGTTGGTACCTTATCCCACTGTTCTGAGGCCAGTGGTAGTGGGCCAGCCCTGTTAGATGAACAGTACTTCTCAACCAGGGTGGCTTTAACCTCAGTTTTGAGACCAGTGGTTCAGTAGAGTATCACTTGAGGGGACTGTTCTTCTCCATCAAGGAAATGTTATTACCCCATGTTCTGAGACCAGTGGTAGAGTGCCAGACATTTTAGATGGACTGTACTTCTCCATCAGGGTAGTTTTAAGTCTATTTAACTACTGATCCAGGGCCAGTTGTAAGAGAGGAGATCTAGTTGATTCGGGTCAGCGTGCAGACAGAAGTCATGTGACCTCCGACAGAGTACGCTGATCACATGACTGGAAGATGCCTCCTTCCCAAGGACTTAAGAAAGGGAGGAGGGGcaagacgggggagagagaaggggaaagagtgGGTGGGTGAAGTGTGGGCGATATCTCTGCCCACCTCACTATCCACTTGATTTCGTCCATCCGCTCGTCCGTCCGTCtgcacgtgtgtatgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtaggtcagaCCTGCACCCCTCTGCCGTGCATCTGGATGACCTGGGCTCTAAGGGTCTGGATGGCAGACAGGATCTGTTTCTGGTGCTCCAGAGAGGTGACGCCTAGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1768849 True 2197 lncRNA 0.43 2 37718313 37720538

Neighbor

gene id symbol gene type direction distance location
prdm1b LOC106588492 coding downstream 628211 37077027 ~ 37090104 (-)
LOC110496124 LOC106588493 coding downstream 661564 36990241 ~ 37056749 (-)
zgc:101785 LOC106588494 coding downstream 728636 36974996 ~ 36989677 (-)
zgc:114119 LOC106588497 coding downstream 778665 36931300 ~ 36939648 (-)
LOC110496120 LOC106588498 coding downstream 883253 36823864 ~ 36835060 (-)
LOC110496131 borea coding upstream 18303 37738841 ~ 37744121 (-)
LOC110496132 LOC106588485 coding upstream 34479 37755017 ~ 37757210 (-)
LOC110496134 LOC106511154 coding upstream 38250 37758788 ~ 37796944 (-)
LOC118941234 NA coding upstream 60831 37781369 ~ 37781447 (-)
LOC110496137 LOC106570035 coding upstream 123498 37844036 ~ 37854732 (-)
G1545811 LOC106588469 non-coding downstream 5429 37712418 ~ 37712884 (-)
G1545810 NA non-coding downstream 6089 37712004 ~ 37712224 (-)
G1545809 NA non-coding downstream 8351 37709592 ~ 37709962 (-)
G1545807 LOC107592052 non-coding downstream 11575 37706273 ~ 37706738 (-)
G1545805 NA non-coding downstream 37768 37679979 ~ 37680545 (-)
G1545864 NA non-coding upstream 92205 37812743 ~ 37814324 (-)
G1545867 LOC106588480 non-coding upstream 98288 37818826 ~ 37820563 (-)
G1545889 NA non-coding upstream 150893 37871431 ~ 37871638 (-)
G1545890 NA non-coding upstream 152793 37873331 ~ 37873563 (-)
G1545892 NA non-coding upstream 153861 37874399 ~ 37874619 (-)
G1544806 NA other downstream 416139 37301508 ~ 37302174 (-)
G1543346 LOC106588513 other downstream 1705627 36010987 ~ 36012686 (-)
G1543128 LOC106588245 other downstream 2214156 35452618 ~ 35504157 (-)
LOC118941140 NA other downstream 2221331 35492995 ~ 35499681 (-)
LOC110496085 NA other downstream 2368651 35346895 ~ 35351655 (-)
ppt1 LOC106588481 other upstream 201617 37922153 ~ 37930745 (-)
LOC110496154 LOC106588291 other upstream 427052 38121576 ~ 38152320 (-)
G1546053 NA other upstream 444712 38165250 ~ 38214049 (-)
LOC110496167 LOC106588455 other upstream 839111 38557052 ~ 38563365 (-)
LOC110496175 LOC104924380 other upstream 953903 38674378 ~ 38676029 (-)

Expression


Co-expression Network