G1545867 (LOC106588480)


Basic Information

Item Value
gene id G1545867
gene name LOC106588480
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 37818826 ~ 37820563 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1768903
TCCCCCCAGGCCTTGTTTCTCCTTCTCGTCATCGCtcatcctccccatctcctcctccatcttgccCTCCTCCGCACCATCCGGGGGCACTCTTCCGTACCCATCGTCCCCACTCTCAATCTCAGGCAGGGACTCCAGGGGGCTCCAGCAGGGCAGGCGGGAGAGCGGGGACAGGGGCCCTGGACCGTAGtggttggaggaggagggaaggtggGGCTGGTCGCGGCCCAATGGGCCCAGGTTACGAGGACGCACCTGGTTGCGATTCTCGTCTCCCCCCGTCATGACGTCATCGTCTTGACCCAGGAAGTTGAAGTTGCCGTCCTTCTCGCCTTGCTTCCTTTTGCCCCCCTGCTGCTGGCTGTTGTTGCTGAGGATCCTCAGTGGGGAGGTGCCTCCCTGGCCTCGGTACTGGGGGTTTACGGGTCTGTCCTGGTGGAGCATTTTGCTCGGCTGAAACTCACTTCTTCTTGCTGGGGATTCAATTCTCCGTGAATGAGATTCAAGTCTTCTTGACCGAGACTCAATTCTTGTTGAAGATTCACTTCTTGATCTTGACTGAGAGTCACGTATGCTAGTAAAGTGCTTCGTAGAGGAAGTAGATTGGGAGCCCTCCCTATTTCCCC

Function

NR:

description
UPF0500 protein C1orf216 homolog isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1768903 True 626 lncRNA 0.58 2 37818826 37820563

Neighbor

gene id symbol gene type direction distance location
LOC110496134 LOC106511154 coding downstream 21882 37758788 ~ 37796944 (-)
LOC118941234 NA coding downstream 37379 37781369 ~ 37781447 (-)
LOC110496132 LOC106588485 coding downstream 61616 37755017 ~ 37757210 (-)
LOC110496131 borea coding downstream 74705 37738841 ~ 37744121 (-)
prdm1b LOC106588492 coding downstream 728724 37077027 ~ 37090104 (-)
LOC110496137 LOC106570035 coding upstream 23473 37844036 ~ 37854732 (-)
ppt1 LOC106588481 coding upstream 101590 37922153 ~ 37930745 (-)
LOC110496145 LOC106588474 coding upstream 157554 37978117 ~ 37992369 (-)
LOC110496154 LOC106588291 coding upstream 301013 38121576 ~ 38152320 (-)
LOC118941154 NA coding upstream 320166 38140729 ~ 38141362 (-)
G1545864 NA non-coding downstream 4502 37812743 ~ 37814324 (-)
G1545820 NA non-coding downstream 98288 37718313 ~ 37720538 (-)
G1545811 LOC106588469 non-coding downstream 105942 37712418 ~ 37712884 (-)
G1545810 NA non-coding downstream 106602 37712004 ~ 37712224 (-)
G1545809 NA non-coding downstream 108864 37709592 ~ 37709962 (-)
G1545889 NA non-coding upstream 50868 37871431 ~ 37871638 (-)
G1545890 NA non-coding upstream 52768 37873331 ~ 37873563 (-)
G1545892 NA non-coding upstream 53836 37874399 ~ 37874619 (-)
G1545879 LOC106588470 non-coding upstream 80245 37900808 ~ 37901659 (-)
G1545922 NA non-coding upstream 138622 37959185 ~ 37963415 (-)
G1544806 NA other downstream 516652 37301508 ~ 37302174 (-)
G1543346 LOC106588513 other downstream 1806140 36010987 ~ 36012686 (-)
G1543128 LOC106588245 other downstream 2314669 35452618 ~ 35504157 (-)
LOC118941140 NA other downstream 2321844 35492995 ~ 35499681 (-)
LOC110496085 NA other downstream 2469164 35346895 ~ 35351655 (-)
G1546053 NA other upstream 344687 38165250 ~ 38214049 (-)
LOC110496167 LOC106588455 other upstream 739086 38557052 ~ 38563365 (-)
LOC110496175 LOC104924380 other upstream 853878 38674378 ~ 38676029 (-)

Expression


Co-expression Network