G1545914 (LOC106588478)


Basic Information

Item Value
gene id G1545914
gene name LOC106588478
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 37959569 ~ 37965967 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1768963
GATGGACTACTCACATTAGGGCTGGCTTCCAGCATGTTGTCCCCATGCCATCCAGAGATGGGCACAAAGGCGACTGTGGCAGGGTTATAGCCGATCTTCTTGATGTAAGTGCTGACCTCCTTCTGGATCTCCTCAAAACGCTTCTGGCTGTAAGGGGGCTCTGTGGAGTCCATCTTGTTGACGCCAACGATGAGCTGCTTCACTCCCAGAGTGAAAGCAAGGAGAGCGTGCTCACGAGTCTGCCCATTCTTTGAGATACCGGCCTCAAACTCACCAACACCACCAGCAACGACCAGCACAGCACAAtcagcctgggggggggggggggggggattaaggTTGGTCAGCCCACCACCTTAAACTGAAACTAATAGGCTGTAGATTAACAGTACAGTCCAATTGCAGTGGGCCCCACTTACCTGAGATGTACCGGTGATCATGTTCTTGATGAAGTCTCTGTGCCCAGGGGCATCAATGATGGTGACGTAGTACCTGCCGGTCTCGAACTTCCACAGGGAAATGTCAATCGTGATGCCACGCTCACGCTCAGCCTTCAGCTTGTCCAGCACCCAGGCATACTTGAAAGAGCCCTTACCCATAGAAACGTAATTTAAGcattttgtgaagtggaaatagAGGCTGTGTACTAGAGATGGGACAACAGAGTCGGCTTTCCGTGGCGGTGCTCAGTAAGTTATtagctaaaaaaatatatacacactgtACCCTTCTAGCAACGA
>TU1768966
GATGGACTACTCACATTAGGGCTGGCTTCCAGCATGTTGTCCCCATGCCATCCAGAGATGGGCACAAAGGCGACTGTGGCAGGGTTATAGCCGATCTTCTTGATGTAAGTGCTGACCTCCTTCTGGATCTCCTCAAAACGCTTCTGGCTGTAAGGGGGCTCTGTGGAGTCCATCTTGTTGACACCAACGATGAGCTGCTTCACTCCCAGAGTGAAAGCAAGGAGAGCGTGCTCACGAGTCTGCCCATTCTTTGAGATACCGGCCTCAAACTCACCAACACCACCAGCAACGACCAGCACAGCACAAtcagcCTGAGATGTACCGGTGATCATGTTCTTGATGAAGTCTCTGTGCCCAGGGGCATCAATGATGGTGACGTAGTACCTGCCGGTCTCGAACTTCCACAGGGAAATGTCAATCGTGATGCCACGCTCACGCTCAGCCTTCAGCTTGTCCAGCACCCAGGCATACTTGAAAGAGCCCTTACCCATAGAAACGTAATTTAAGcattttgtgaagtggaaatagAGGCTGTGTACTAGAGATGGGACAACAGAGTCGGCTTTCCGTGGCGGTGCTCAGTAAGTTATtagctaaaaaaatatatacacactgtACCCTTCTAGCAACGA
>TU1768968
GATGGACTACTCACATTAGGGCTGGCTTCCAGCATGTTGTCCCCATGCCATCCAGAGATGGGCACAAAGGCGACTGTGGCAGGGTTATAGCCGATCTTCTTGATGTAAGTGCTGACCTCCTTCTGGATCTCCTCAAAACGCTTCTGGCTGTAAGGGGGCTCTGTGGAGTCCATCTTGTTGACACCAACGATGAGCTGCTTCACTCCCAGAGTGTAGGCCAGGAGAGCGTGCTCACGAGTCTGCCCGTTCTTTGAGATACCGGCCTCAAACTCACCAACACCACCAGCAACGACCAGCACAGCGCAATCAGCCTGggggggggattaaggTTGGTCAGCCCACCACCTTAAACTGAAACTAATAGGCTGTAGATTAACAGTACAGTCCAATTGCAGTGGGCCCCACTTACCTGAGATGTACCGGTGATCATGTTCTTGATGAAGTCTCTGTGCCCAGGGGCATCAATGATGGTGACGTAGTACCTGCCGGTCTCGAACTTCCACAGGGAAATGTCAATCGTGATGCCACGCTCACGCTCAGCCTTCAGCTTGTCCAGCACCCAGGCATACTTGAAAGAGCCCTTACCCATAGAAACGTAATTTAAGcattttgtgaagtggaaatagAGGCTGTGTACTAGAGATGGGACAACAGAGTCGGCTTTCCGTGGCGGTGCTCAGTAAGTTATtagctaaaaaaatatatacacactgtACCCTTCTAGCAACGA
>TU1768962
TCAATGTTTCACAGCAACAGAAACCAGACTTTATTTTAATATTCTAACACAACATATCATGGTAGATAGCAGTATGGATCCAACAGTAACTGATTCAGCGTTTTGGCTTTATGAGAATCAAGAAAACAGCAGCGTTTTGGCGGTTCATGTTCATGGTTTTTTATTTTATCATAATTTTCCCTAAAGCATTATTCTTCGAACATTTGCTTTCCTTTCCTGCGAAAATTTTTGCGATGGGTTTTTATTAGCATTAGCCAGTCCTTGAGTAGAGAGCTCAGGTTCTGAGACACTGCAGGATGGGATGCCGGTGACACACTTTGTTGTTGCTGGATGTCTGGAGCAGGAATTCATTTAGCTTTGGCAGCCTTAACGGCGGACTTGGTCACCTTGCCAGTGCTGGCAGCCTTCTTGTCGACGGCCTTGATGACACCAACAGCCACGGTCTGCCTCATGTCACGCACGGCAAAACGACCTGCGAGGGGAGGGTAGGCGGCGAAGCTCTCCACACACATGGGCTTTCCTGGCACCATGACGATGATGGCGGCGTCTCCAGACTTCAGGGCTTTGGGGTTGTCCTCAAGCTTCTTGCCGGAACGACGGTCGATCTTCTCCTTGAGCTCGCTGAACTTGCAGGCGATGTGAGCGGTATGGCAATCCAGCACGGGGGCATAGCCCTGGGAGATGGTGCCCGGGTGGTTCAGGATGATGACCTGAGGTGAAGTTGCCGGCCTCCATTGGAGGGTCGTTCTTGCTGTCTCCAGCCACGTTGCCACGACGAATATCCTTGACGGACACGTTCTTGACGTTGAAGCCCACGTTGTCACCGGGGAGAGCCGCTTCCAGGGTCTCGTGGTGCATCTCCACAGACTTGACTTCAGTGGTGACGTTAGCGGGGGCGAAGGTGACGATCATACCGGCCTTCAGGGTGCCTGTCTCCACACGGCCCACAGGTACAGTTCCAATACCTGAGGAAACCAGGGGA
>TU1768969
ATTTTTGGTCAAGACATTTAAAGACCTTTATTAGTTATCAGCAGTTTACTTCCAATTTAATAGTAGAATCAAAACAGGTTCCGTTCAACCATATACACAATTTAACTGAAAGAGGCACCGCCTGTAATGACGAATCCACAAGTGTCTCCACGTTGGGTTCCTTTCCTGCGGAAACTTTTACGATGAGTTTTAATCAGCATTAACCAGTCCTTAAGTATAGAGCTTAGGTTTTGAGACGCCGCAGGATGTTGGGCAGCAGACACCGCTACCTGAGGGACGTCCTGTGGGAGGGGAATTCACTTTTTACCGGCCTTAACGGCAGACTTTGTGACCTTGCCGCTTGAGGCGGCCTTCTTGTCAACAGCCTTGATGACACCGACAGCGACTGTCTGTCTCATGTCACGCACAGCAAAACGACCAAGAGGGGGGTATTCCTGGAAACTCTCCACACACATGGGCTTGCCGGGGATCATGTCAACGATAGCAGCATCTCCAGACTTCAGGAACTTGGGGGCATCTTCAAGCTTCTTGCCGGACCGACGGTCAATCTTCTCCTTGAGCTCACTGAACTTGCAGGCGATGTGAGCAGTATGGCAATCCAGCACAGGGGCATAGCCCTGGGAGATCTGGCCAGGGTGGTTCAGTGCCAGCCTCCATTGGAGGGTCATTCTTGCTGTCTCCAGCTACGTTGCCACGACGGATATCCTTGACGGACACGTTCTTGACGTTGAATCCGACGTTGTCACCGGGCATAGCCGATTCCAGGGTCTCGTGGTGCATCTCCACAGACTTGACTTCAGTGGTGACGTTAGCGGGGGCGAAGGTGACGATCATACCGGCCTTCAGGGTGCCTGTCTCCACACGGCCCACAGGTACAGTTCCAATACCTGAGGAAACCAGGGGA
>TU1768974
ATTTTTGGTCAAGACATTTAAAGACCTTTATTAGTTATCAGCAGTTTACTTCCAATTTAATAGTAGAATCAAAACAGGTTCCGTTCAACCATATACACAATTTAACTGAAAGAGGCACCGCCTGTAATGACGAATCCACAAGTGTCTCCACGTTGGGTTCCTTTCCTGCGGAAACTTTTACGATGAGTTTTAATCAGCATTAACCAGTCCTTAAGTATAGAGCTTAGGTTTTGAGACGCCGCAGGATGTTGGGCAGCAGACACCGCTACCTGAGGGACGTCCTGTGGGAGGGGAATTCACTTTTTACCGGCCTTAACGGCAGACTTTGTGACCTTGCCGCTTGAGGCGGCCTTCTTGTCAACAGCCTTGATGACACCGACAGCGACTGTCTGTCTCATGTCACGCACAGCAAAACGACCAAGAGGGGGGTATTCCTGGAAACTCTCCACACACATGGGCTTGCCGGGGATCATGTCAACGATAGCAGCATCTCCAGACTTCAGGAACTTGGGGGCATCTTCAAGCTTCTTGCCGGACCGACGGTCAATCTTCTCCTTGAGCTCACTGAACTTGCAGGCGATGTGAGCAGTATGGCAATCCAGCACAGGGGCATGCCTACTTGAGCAGTGAAAGTGCCAGCCTCCATTGGAGGGTCATTCTTGCTGTCTCCAGCTACGTTGCCACGACGGATATCCTTGACGGACACGTTCTTGACGTTGAATCCGACGTTGTCACCGGGCATAGCCGATTCCAGGGTCTCGTGGTGCATCTCCACAGACTTGACTTCAGTGGTGACGTTAGCGGGGGCGAAGGTGACGATCATACCGGCCTTCAGGGTGCCTGTCTCCACACGGCCCACAGGTACAGTTCCAATACCTGAGGAAACCAGGGGA

Function

NR:

description
elongation factor 1-alpha, oocyte form-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1768963 False 740 lncRNA 0.51 3 37959569 37964103
TU1768966 False 632 lncRNA 0.50 4 37959569 37964103
TU1768968 False 730 lncRNA 0.51 3 37959569 37964103
TU1768962 False 982 lncRNA 0.52 4 37960798 37965967
TU1768969 False 904 lncRNA 0.51 3 37960798 37961911
TU1768974 True 893 lncRNA 0.51 3 37960798 37961911

Neighbor

gene id symbol gene type direction distance location
ppt1 LOC106588481 coding downstream 28824 37922153 ~ 37930745 (-)
LOC110496137 LOC106570035 coding downstream 104837 37844036 ~ 37854732 (-)
LOC110496134 LOC106511154 coding downstream 162625 37758788 ~ 37796944 (-)
LOC118941234 NA coding downstream 178122 37781369 ~ 37781447 (-)
LOC110496132 LOC106588485 coding downstream 202359 37755017 ~ 37757210 (-)
LOC110496145 LOC106588474 coding upstream 12150 37978117 ~ 37992369 (-)
LOC110496154 LOC106588291 coding upstream 155609 38121576 ~ 38152320 (-)
LOC118941154 NA coding upstream 174762 38140729 ~ 38141362 (-)
trnaa-ugc-137 NA coding upstream 329916 38295883 ~ 38295956 (-)
LOC118936476 LOC106588460 coding upstream 522903 38488870 ~ 38491346 (-)
G1545879 LOC106588470 non-coding downstream 57910 37900808 ~ 37901659 (-)
G1545892 NA non-coding downstream 84950 37874399 ~ 37874619 (-)
G1545890 NA non-coding downstream 86006 37873331 ~ 37873563 (-)
G1545889 NA non-coding downstream 87931 37871431 ~ 37871638 (-)
G1545867 LOC106588480 non-coding downstream 139006 37818826 ~ 37820563 (-)
G1545919 rl11 non-coding upstream 3157 37969124 ~ 37974469 (-)
G1545973 NA non-coding upstream 36983 38002950 ~ 38005052 (-)
G1545942 NA non-coding upstream 61111 38027078 ~ 38027304 (-)
G1545930 NA non-coding upstream 86482 38052449 ~ 38053142 (-)
G1545937 NA non-coding upstream 93095 38059062 ~ 38061372 (-)
G1544806 NA other downstream 657395 37301508 ~ 37302174 (-)
G1543346 LOC106588513 other downstream 1946883 36010987 ~ 36012686 (-)
G1543128 LOC106588245 other downstream 2455412 35452618 ~ 35504157 (-)
G1546053 NA other upstream 199283 38165250 ~ 38214049 (-)
LOC110496167 LOC106588455 other upstream 593682 38557052 ~ 38563365 (-)
LOC110496175 LOC104924380 other upstream 708474 38674378 ~ 38676029 (-)
G1546385 LOC106588448 other upstream 802130 38768097 ~ 38773684 (-)

Expression


Co-expression Network