G1545919 (rl11)


Basic Information

Item Value
gene id G1545919
gene name rl11
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 37969124 ~ 37974469 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1768980
AACAAGGCCAATGGTGATCCTTTACTTCCCGGGGAGGATGATCCCATCATACTTCTGCTGGAACCAGCGCATGGCCTCCTCTTTGCGGATACGGTGCCTGAAACCGATGCGACCGGTTTTCTGCTTCTTGTCAGCGATGCTGAAGCCAGGTCTGCCAAGGACGACATAGAAGTCCAGTCCATAGATACCGATGCTGGGGTCGTACTTGATTCCCAGATCAATGTGTTCCTGGATGCCAAAGCCGAAGTTCCCAGTGTCGGAGAAGTTGTTCTTCCTCAACTCGTACTCACGCACCTTTGGAAGGATGCGTTACACCAATTAGGAAGGGCAACATATAGCAACTTCAAGCAATCTGACTAAATACATTCCTAACCATGTGGACAAAGTTCACACCCTAGATAAAACACTATTGGTTGAAGTTGAACATGAGTGATACAATGCAAAacattagtcatttagcagacacttctcCAGAGCAAATTGGGTTTAAGGgtcttgttcaagggcacattgacaaaCCTCTcctagtcggctctgggattcaaaccagctacCTTATGTTTACTGGCACAACGCCCTTAGCCGCTGGGCTACCTGAGGCCCTAAAAGTATGCATAATTCAATAATGCATGGAACAGCAGCCAATGTTATGAAGGTTACCACACTACACTAAGCCCCAACCAAAGGTGTCAGAAACATTCCCTTGACAAATGAATGGTGATTAAGACATGTGCAAGGTCATCAAAACATCCATAAAAATGTAATGCAGTGTTTCTAATAAATAAGTAATATTGAAAGCACACCTTGAGTCCCTTCTCCAGGATCTCCTCAGCCTTAGCTCCACGTACGGTACAGTGGACAGCAATCTTTTCATTTCTGCGGATGCCGAAGGATCGCACAGTGTAGCGGGCTTGGAGAAGACAGGCGTCTGTCCTGTCAGCTGCTCAAGCACCTTAGCAGCACGGGTCAGTCGGTCACCACTCTCCCCAACACAGATGTTCATACAGAGCTTGCGGATGCGAAGCTCACGCATGGGGTTCTCCTTTTTCTTCTTCTTCCCCAGCCAGTTGTTCACATCTGGGCCTGCGCGGGCAGCCAGAGGCCAGCTCTGTGAGGAGGGCACTTCCAAGGCGGGCACCACATCCACAGAAAGTAGTTCCTCTTTCCCATTATCCACCTCCAACAGGGAAAGGGTCACCGCTGGGGAGTTTGGACGCTTCCTCTTCACAACCCAACGCCAGCTATTTCCAGGCACTGCTGATCAAAGAACACACAAAAGCCTACAGGTATGTGCCACGTCATATTTAGACAAACAGTTTATATTACTAATATATATATAGGTGGCTGGAGATGTGGACACCGACCACTGACCTCTAAGACTCAAGGATTCATATTGACCCCTTAACAACATAGCATCCACAGATAAACCAGTCGGACAAGATACAGCATATGAACACACAGTATGGGTAGGTGAGCACTTGTATGACTGCATTTCCACACAATCAGGTGAATATAGACCTGTTACCACACCTTTGTAGGTGCTGATGAACTTTCGGACCAGACGGTGCATTTCCCTTATGATCTTGCTGGCTGAGATGGTGAGCCCATCTTCCAATAGGAAAGACCGTATGTGGGAACGCGTCGGTCGGGAAAGGGCGACTTCGTAGAACAGGCCGTGGTATTGGTCCAGCTCAGTCATTTTGAGGCGGGAAGGAGACTGGAGCTTCAGCATCATGTCAAACTCATTT

Function

NR:

description
60S ribosomal protein L11-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1768980 True 1748 lncRNA 0.48 5 37969124 37974469

Neighbor

gene id symbol gene type direction distance location
ppt1 LOC106588481 coding downstream 38379 37922153 ~ 37930745 (-)
LOC110496137 LOC106570035 coding downstream 114392 37844036 ~ 37854732 (-)
LOC110496134 LOC106511154 coding downstream 172180 37758788 ~ 37796944 (-)
LOC118941234 NA coding downstream 187677 37781369 ~ 37781447 (-)
LOC110496132 LOC106588485 coding downstream 211914 37755017 ~ 37757210 (-)
LOC110496145 LOC106588474 coding upstream 3648 37978117 ~ 37992369 (-)
LOC110496154 LOC106588291 coding upstream 147107 38121576 ~ 38152320 (-)
LOC118941154 NA coding upstream 166260 38140729 ~ 38141362 (-)
trnaa-ugc-137 NA coding upstream 321414 38295883 ~ 38295956 (-)
LOC118936476 LOC106588460 coding upstream 514401 38488870 ~ 38491346 (-)
G1545914 LOC106588478 non-coding downstream 3157 37959569 ~ 37965967 (-)
G1545922 NA non-coding downstream 5709 37959185 ~ 37963415 (-)
G1545879 LOC106588470 non-coding downstream 67465 37900808 ~ 37901659 (-)
G1545892 NA non-coding downstream 94505 37874399 ~ 37874619 (-)
G1545890 NA non-coding downstream 95561 37873331 ~ 37873563 (-)
G1545973 NA non-coding upstream 28481 38002950 ~ 38005052 (-)
G1545942 NA non-coding upstream 52609 38027078 ~ 38027304 (-)
G1545930 NA non-coding upstream 77980 38052449 ~ 38053142 (-)
G1545937 NA non-coding upstream 84593 38059062 ~ 38061372 (-)
G1545986 NA non-coding upstream 87458 38061927 ~ 38062239 (-)
G1544806 NA other downstream 666950 37301508 ~ 37302174 (-)
G1543346 LOC106588513 other downstream 1956438 36010987 ~ 36012686 (-)
G1543128 LOC106588245 other downstream 2464967 35452618 ~ 35504157 (-)
G1546053 NA other upstream 190781 38165250 ~ 38214049 (-)
LOC110496167 LOC106588455 other upstream 585180 38557052 ~ 38563365 (-)
LOC110496175 LOC104924380 other upstream 699972 38674378 ~ 38676029 (-)
G1546385 LOC106588448 other upstream 793628 38768097 ~ 38773684 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G200889 NA non-coding NC_035919.1 CM008322.1 29519495 ~ 29521670 (-)