G1545973


Basic Information

Item Value
gene id G1545973
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 38002950 ~ 38005052 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1769038
CACGTCCATTTGGATCCAGGTTCAGGGGGAGCCAGGGGTCCCAGAgatgaaaataaatacataagAGTGAAGCTGCAGGGtcctatcacttcctctctcctctttctccctttttGTGTTTTCCTCTTTCTGCGCTCACTTCATTCCTCACTCATCACAGTGAACCAGATAAAAGTAGGGATGCACATGTGGTTCAACACTGAACACAGTAAGAAAACATGGTGTGGATGCACTGGAATAAAATGGGTCTATTCAATTGTACGTAAAAACATGCTGCCTGTAACAGCACTGTCATTTGATGTCTTAACTTATGCGTACCATAATAAAGCATAGTTCTGTCTgtgtcagagttcctctgtagtgTATGAACTTGTAACAAATGACTAGTTTCGCATTTGAAATATTTTGTCTGCGTGTTTGTTTGCCAGGGACTATCTGGGAACATTTCAAAATGGAGGACATAATTGTGTGTGTATTTAAGAAATGCTAAAATAATGGagaaaatctgtgtgtgtgtgtgtgtacagtcgtggTGGGCATTTGTAGATTACCCATAATTCATTGAATTAAAAAGATCTTAGCTCCTAcaatctcttcctctcctctcaatcACGTCATACATtcatctctctctagctctatcgGCGGGAGAATCTGTTCTTGAAAGCTTTGATAGTTTTGGCCATCATGGGGGCGATT

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1769038 True 699 lncRNA 0.41 2 38002950 38005052

Neighbor

gene id symbol gene type direction distance location
LOC110496145 LOC106588474 coding downstream 10581 37978117 ~ 37992369 (-)
ppt1 LOC106588481 coding downstream 72205 37922153 ~ 37930745 (-)
LOC110496137 LOC106570035 coding downstream 148218 37844036 ~ 37854732 (-)
LOC110496134 LOC106511154 coding downstream 206006 37758788 ~ 37796944 (-)
LOC118941234 NA coding downstream 221503 37781369 ~ 37781447 (-)
LOC110496154 LOC106588291 coding upstream 116524 38121576 ~ 38152320 (-)
LOC118941154 NA coding upstream 135677 38140729 ~ 38141362 (-)
trnaa-ugc-137 NA coding upstream 290831 38295883 ~ 38295956 (-)
LOC118936476 LOC106588460 coding upstream 483818 38488870 ~ 38491346 (-)
LOC110496164 LOC106588460 coding upstream 497067 38502119 ~ 38505762 (-)
G1545919 rl11 non-coding downstream 28481 37969124 ~ 37974469 (-)
G1545914 LOC106588478 non-coding downstream 36983 37959569 ~ 37965967 (-)
G1545922 NA non-coding downstream 39535 37959185 ~ 37963415 (-)
G1545879 LOC106588470 non-coding downstream 101291 37900808 ~ 37901659 (-)
G1545892 NA non-coding downstream 128331 37874399 ~ 37874619 (-)
G1545942 NA non-coding upstream 22026 38027078 ~ 38027304 (-)
G1545930 NA non-coding upstream 47397 38052449 ~ 38053142 (-)
G1545937 NA non-coding upstream 54010 38059062 ~ 38061372 (-)
G1545986 NA non-coding upstream 56875 38061927 ~ 38062239 (-)
G1545989 NA non-coding upstream 59532 38064584 ~ 38065131 (-)
G1544806 NA other downstream 700776 37301508 ~ 37302174 (-)
G1543346 LOC106588513 other downstream 1990264 36010987 ~ 36012686 (-)
G1543128 LOC106588245 other downstream 2498793 35452618 ~ 35504157 (-)
G1546053 NA other upstream 160198 38165250 ~ 38214049 (-)
LOC110496167 LOC106588455 other upstream 554597 38557052 ~ 38563365 (-)
LOC110496175 LOC104924380 other upstream 669389 38674378 ~ 38676029 (-)
G1546385 LOC106588448 other upstream 763045 38768097 ~ 38773684 (-)

Expression


Co-expression Network