G1545149


Basic Information

Item Value
gene id G1545149
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 38051108 ~ 38053166 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1768086
caatttaaatgattttactgagttacatttcatataaggaaataaattaattaggcaataatctatggatttcacatgactgggcaggggtgcagccatgggtggggggggggcatatgTGATCGGCAACCTCCAATTTCCAGATTTGCTTGGTTGTGTGGTTCATCATTATGGGTTCTTACACTTTCTCAGTTGCTCCCCTAGGTCATTTAGGAAGGTTTTAGTTTGACTTATGACTTTTGTTACACCCAGCTTTCATTTATGTACTCTGAGATTGTAATGGAAATGGCAAACATGAGCTTGTTGATTTTAATTTTATACTTGACAACTGAGTAGGCTGGGAACAGCCTCTAAGTTTGTAGAATGTGACTTTGGTGTATTGCTAAGATCAACTAGAATGTGTCATTTTCAAGTGTTAATCCACTGGGCTATTCTTGGGTGGGTGGACCGTTGTGGGACTGGGTTTGGGTCTATCTGGGTCATTCACAGCCTAGCTATTCATAAAGAGCACTTGGTCACTTCACTTGATACTATAGTGTGGCAACTACCATACACAAGaaggcactttctctttctctctcctgtaccTTGGAAAGACCTGTGACTCTGTCCAAAAATGGCAGCCTGTTCCCCCCCCTTTTGTAttttagggctgaccccatttagttgattgtttggtcgatagacCGTGTATGTTGACCAAGATTTCCTTGGTTGAGCAGCAGCAAAAAAAATAAGTCAATGgtgtacaagacacctgtctggTTCGTGCCTGTCTTCGTGGAcaaatccattgtggaggccctGTGGGGATGGCCATGTCCATCACTCTCAGACATGTTCTACTGATTGTGTACTGTTAAGgacaatggtgcaacactaaaataatatttttttaacatGCGCTTTCTCCCTCGTTTGCAAGCGGTCGCTGTCAGCGGTTTTGAAATATCAGTCCTCTGTtcatttaattttatttatttaaccttttatttaaccaggtaggccagttgagaacaagttctcatttgcaactgcaacctggccaagataaagcaaagtggTGCGACACacaaacaacagttacacatgaaataaacaaacgtacagtcaataacacatcagaaaagtctatatacagtgtgtgcaaatgttgaATTGCCACCTTTTCCCAGACCATGTTATGTGCATAATAGAAATGTTAAACGCATTGGTGTTGAGAGAAATGCAGCGGAGGCAGGTGACAAGAAAACAGCCCTTGACATATTTGTCTAGGAAAAGTGAGGAAATCCCAACTTAATTAATGTCTTTAATCAATAGCCTAAATGTGCCATATATATAAATTCTCTAAGCGGCCTCAAACGGTAGTATACGTGCGTGACAGATCatgcttctgttgcctgttttaTTAATAGCCTACTTATTCCCATGCAACCACGTGgaataaacaatttcacaaattcgGCTGTTTTTAGTCTTTGCTATATGCTGTAATAAAGGCGTTACACTTTTTGTTAGAACAGCCTCTGGTATTATTTATTTAGTGTGTACACTGTTCCAAATGATCAGAAAGGATGTATAATAACCCTCGATCTTGATATTATTATGATCATTATAATAAgtgatgtcattatcattagGCTTAGTATAACAGCCTTGTATAACCAACATTGAGCTGTAAGGCCTAAGAGCGcatcctgtttagtcttaatacTGTAATTTACTTGGGCCTGTATTTCAATATATATATCATTGTACGCCATTGTAGCGATAATTAATTTGTTCGTCATCACACAGCGTACGAGTCATTTGGATTTTAAATGCAATGAAgcattcaaaaaatatatatatataataataaagcAACCATTGAATAATTAGCCTAAACAGTAAATAAACTGCTCTATTTCTGCAATTGCATTCACAAATGCATGCGACTGTTTTTAGTCTTGCTGTAAAaggctttacaaaaaaatactttCTGGTATGCATATTTGGTTAGTGTTTATGTTTTTCCAAACGGTCAGAAATGTTTGAAATCTAACCGCAGCAGTTTGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1768086 True 2059 lncRNA 0.38 1 38051108 38053166

Neighbor

gene id symbol gene type direction distance location
LOC110496147 LOC106588484 coding upstream 30884 38008948 ~ 38020224 (+)
pithd1 pithd1 coding upstream 42326 38005691 ~ 38008782 (+)
LOC110496146 LOC106588473 coding upstream 47119 37995963 ~ 38003989 (+)
rl11 LOC106570028 coding upstream 76636 37971439 ~ 37974472 (+)
LOC110496144 NA coding upstream 80142 37967046 ~ 37970966 (+)
LOC110496152 LOC106588467 coding downstream 11404 38064570 ~ 38087903 (+)
LOC110496153 LOC106588466 coding downstream 45497 38098663 ~ 38107458 (+)
LOC110496156 LOC106588465 coding downstream 100679 38153845 ~ 38159055 (+)
LOC110496157 LOC106588464 coding downstream 106527 38159693 ~ 38189735 (+)
LOC110496158 LOC106588463 coding downstream 140008 38193174 ~ 38204538 (+)
G1545229 NA non-coding upstream 25907 38024970 ~ 38025201 (+)
G1545205 NA non-coding upstream 173221 37877647 ~ 37877887 (+)
G1545204 NA non-coding upstream 173971 37876906 ~ 37877137 (+)
G1545203 NA non-coding upstream 174406 37876484 ~ 37876702 (+)
G1545197 NA non-coding upstream 189821 37861087 ~ 37861287 (+)
LOC110496149 LOC100136012 non-coding downstream 137 38029173 ~ 38057722 (+)
G1545242 NA non-coding downstream 41796 38094962 ~ 38095210 (+)
G1545258 NA non-coding downstream 68427 38121593 ~ 38132628 (+)
G1545261 NA non-coding downstream 75013 38128179 ~ 38129018 (+)
G1545272 NA non-coding downstream 92339 38145505 ~ 38145709 (+)
G1544455 NA other upstream 994621 37055983 ~ 37056487 (+)
G1544137 NA other upstream 1187925 36862923 ~ 36863183 (+)
G1544007 NA other upstream 1285875 36764294 ~ 36765233 (+)
LOC110496111 LOC106588509 other upstream 1959502 36076661 ~ 36091606 (+)
G1542324 LOC106588514 other upstream 2087403 35961201 ~ 35963705 (+)
G1545533 LOC104965079 other downstream 621861 38675027 ~ 38676004 (+)
LOC110496176 LOC106588451 other downstream 637272 38677975 ~ 38696088 (+)
G1546605 LOC106588434 other downstream 1063322 39116488 ~ 39120019 (+)
G1546641 NA other downstream 1079953 39133119 ~ 39146252 (+)

Expression


Co-expression Network