G1545930


Basic Information

Item Value
gene id G1545930
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 38052449 ~ 38053142 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1768991
AAACATTTCTGACCGTTTGGAAAAACATAAACACTAACCAAATATGCATACCAGaaagtatttttttgtaaagcctTTTACAGCAAGACTAAAAACAGTCGCATGCATTTGTGAATGCAATTGCAGAAATAGAGCAGTTTATTTACTGTTTAGGCTAATTATTCAATGGTTgctttattattatatatatatattttttgaatgcTTCATTGCATTTAAAATCCAAATGACTCGTACGCTGTGTGATGACGAACAAATTAATTATCGCTACAATGGCGTACAATGATATATATATTGAAATACAGGCCCAAGTAAATTACAgtattaagactaaacaggatgCGCTCTTAGGCCTTACAGCTCAATGTTGGTTATACAAGGCTGTTATACTAAGCctaatgataatgacatcacTTATTATAATGATCATAATAATATCAAGATCGAGGGTTATTATACATCCTTTCTGATCATTTGGAACAGTGTACACACTAAATAAATAATACCAGAGGCTGTTCTAACAAAAAGTGTAACGCCTTTATTACAGCATATAGCAAAGACTAAAAACAGCcgaatttgtgaaattgtttattcCACGTGGTTGCATGGGAATAAGTAGGCTATTAAtaaaacaggcaacagaagcatGATCTGTCACGCACGTATACTACCGTTTGAGGCCGCTTAGAGAATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1768991 True 694 lncRNA 0.33 1 38052449 38053142

Neighbor

gene id symbol gene type direction distance location
LOC110496145 LOC106588474 coding downstream 60080 37978117 ~ 37992369 (-)
ppt1 LOC106588481 coding downstream 121704 37922153 ~ 37930745 (-)
LOC110496137 LOC106570035 coding downstream 197717 37844036 ~ 37854732 (-)
LOC110496134 LOC106511154 coding downstream 255505 37758788 ~ 37796944 (-)
LOC110496154 LOC106588291 coding upstream 68434 38121576 ~ 38152320 (-)
LOC118941154 NA coding upstream 87587 38140729 ~ 38141362 (-)
trnaa-ugc-137 NA coding upstream 242741 38295883 ~ 38295956 (-)
LOC118936476 LOC106588460 coding upstream 435728 38488870 ~ 38491346 (-)
LOC110496164 LOC106588460 coding upstream 448977 38502119 ~ 38505762 (-)
G1545942 NA non-coding downstream 25145 38027078 ~ 38027304 (-)
G1545973 NA non-coding downstream 47397 38002950 ~ 38005052 (-)
G1545919 rl11 non-coding downstream 77980 37969124 ~ 37974469 (-)
G1545914 LOC106588478 non-coding downstream 86482 37959569 ~ 37965967 (-)
G1545922 NA non-coding downstream 89034 37959185 ~ 37963415 (-)
G1545937 NA non-coding upstream 5920 38059062 ~ 38061372 (-)
G1545986 NA non-coding upstream 8785 38061927 ~ 38062239 (-)
G1545989 NA non-coding upstream 11442 38064584 ~ 38065131 (-)
G1545988 NA non-coding upstream 12360 38065502 ~ 38067551 (-)
G1546011 NA non-coding upstream 42834 38095976 ~ 38096331 (-)
G1544806 NA other downstream 750275 37301508 ~ 37302174 (-)
G1543346 LOC106588513 other downstream 2039763 36010987 ~ 36012686 (-)
G1543128 LOC106588245 other downstream 2548292 35452618 ~ 35504157 (-)
G1546053 NA other upstream 112108 38165250 ~ 38214049 (-)
LOC110496167 LOC106588455 other upstream 506507 38557052 ~ 38563365 (-)
LOC110496175 LOC104924380 other upstream 621299 38674378 ~ 38676029 (-)
G1546385 LOC106588448 other upstream 714955 38768097 ~ 38773684 (-)

Expression


Co-expression Network