G1546013


Basic Information

Item Value
gene id G1546013
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 38098706 ~ 38107429 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1769095
ATTCAATGGTTTGGATAGACACACACAATAATTTTCTCTCAAATGACTAGcctagatacagcactgttaagCAGAAATATACATGTACAAAACACACAGGATGATGTACAGGTGTAGGGTCTTCCTTTTATCACtcgttgctgagaattttcctgcactgcAAAATGGAGATATGTTTCATGATTTACAAAAAATAATTGAAAAcccacactaaacacacacacttaatattgtacttttcatgtagcctaaatTTGGCCAGGTAACAGCTTAACCACCTATCAAGCAACATATGATTGAAGGACTAaagttcaaatcctgttgctatAACAATACTAtgcaaattaagatccaacaccTGTAGCCTACTGAGAAGTGAAGAGGCGTGAACTGAATATATCTGACAAGTTTTTCATTAGACTGTTTTACACCATAGCATAAAAAGCATTAAATTATATGCACAAAGAAAGATGTGAATATCAGCAGTAATCTCCTGTAAACCAGTCATAATACAGTTTCTCCTCACTTCTTATCAATGCCAGCAAAAAAATGATTGTTGTTCAGAGACATATTTAGGAACCTTTGAGTTTCTTAAAGATACTGTTTCACAAGGGGGGTTTTGTCTCACATATTCTTCTCTGAGTCTTATTACAGTTGACATCCAACCAACTCTTGACGTCTTTAGTACCACCCGGTTCCCCCATTCTAACACAGTCTTCACCGTCGGGATTCTCTCCTTTCCAGTCATCTGGCTCCCGGTCACCAAGCCAGAATCTATGGATTGAAGGATGATAATTCATAAGAGGTATGATCACAATAAGTTTTAATCTAGGGTGATTGTATTATGATATTGATTTAAACATGCATTCAAACCTTGTGCTTAGAGATGAATTGTCCACCCATAACCACTCATTCTCGTTTATACTGTCCGTCAGCCCAATCCAGAACTTGTCTTCAGGCTCCGTACTTATTTTTGTACCACTTTTCTGATCTAAGAACGTCTTCACCAGAAACATTGTTTGAAGACTTATGTCAAGATTTATTTTCATTTGTATGTTAGTAGAGGAAAGGAAAAATGTGCATCAAAACTACAGAGAGAATCAATAATAGAGTCATACCTGCTCCTCTAGGCTCCCTATGATGACAAGGTGTCCCCCCCTGGTGATACACTCATCCCGACTCTGAGCCCAGGTCAGTTTATCAGGGGAGAAGTAATAGCACTTCCCCCCATAATACTCCCAGCCTTCAGCACAGTTCATAGGCTGAGGACAGTCATTATTCCCTGTGTTTGTAGGGCAAGAGGGTGGAGTTCTCTCCTTTCTCAATTCTTCATTTTGTTGCCAAACTGCACGTTCCTTCTCCTGAAGATCTTTGTTCTTGTCTTGCAGTTCTTGAAGCTCTCTCTCTTTGATCATTAAAGCTGAGGTAAAAGCTTTTTCCAAACCTGTAAGATTTCGATTGTAAGCCGCTTGCAGAATTTGGAGCTCTGTGTTTTTGGTTGGCAGGTTGCTGATATACAGGAACCGAAGTCCAATGACCGTCCCCATCAGAAGAAAACAGAGAGTCACCAGGACCACTTTGACAGGGTCACATCCACCTgctctgacctttaacccctcCTGAGAATCAGGGTCACcagcattagTGTCGGTAGATGGCTGGTTGCGTCCGGCTTTGGGAATTGAGATTTCAGAGTGCGTGGCATCATTCACTGTGGATGCTGTTGCACCATCTTTTCCTTCAGTCTTTTGGTGCTTTTTGAACTTCACATCAGCGTAGACTATTCCTTCAGACATACTGATCTAAACACTCATACCAG
>TU1769094
ATTCAATGGTTTGGATAGACACACACAATAATTTTCTCTCAAATGACTAGcctagatacagcactgttaagCAGAAATATACATGTACAAAACACACAGGATGATGTACAGGTGTAGGGTCTTCCTTTTATCACtcgttgctgagaattttcctgcactgcAAAATGGAGATATGTTTCATGATTTACAAAAAATAATTGAAAAcccacactaaacacacacacttaatattgtacttttcatgtagcctaaatTTGGCCAGGTAACAGCTTAACCACCTATCAAGCAACATATGATTGAAGGACTAaagttcaaatcctgttgctatAACAATACTAtgcaaattaagatccaacaccTGTAGCCTACTGAGAAGTGAAGAGGCGTGAACTGAATATATCTGACAAGTTTTTCATTAGACTGTTTTACACCATAGCATAAAAAGCATTAAATTATATGCACAAAGAAAGATGTGAATATCAGCAGTAATCTCCTGTAAACCAGTCATAATACAGTTTCTCCTCACTTCTTATCAATGCCAGCAAAAAAATGATTGTTGTTCAGAGACATATTTAGGAACCTTTGAGTTTCTTAAAGATACTGTTTCACAAGGGGGGTTTTGTCTCACATATTCTTCTCTGAGTCTTATTACAGTTGACATCCAACCAACTCTTGACGTCTTTAGTACCACCCGGTTCCCCCATTCTAACACAGTCTTCACCGTCGGGATTCTCTCCTTTCCAGTCATCTGGCTCCCGGTCACCAAGCCAGAATCTTGTGCTTAGAGATGAATTGTCCACCCATAACCACTCATTCTCGTTTATACTGTCCGTCAGCCCAATCCAGAACTTGTCTTCAGGCTCCGTACTTATTTTTGTACCACTTTTCTGATCTAAGAACGTCTGCTCCTCTAGGCTCCCTATGATGACAAGGTGTCCCCCCCTGGTGATACACTCATCCCGACTCTGAGCCCAGGTCAGTTTATCAGGGGAGAAGTAATAGCACTTCCCCCCATAATACTCCCAGCCTTCAGCACAGTTCATAGGCTGAGGACAGTCATTATTCCCTGTGGAGAGAACCAATAACCCAATGCCATTGTCAGTGCCCCGTGCACTACTCATCTCTATGCCTACCTATAGTCAAATGTCTTTTGTTTTTGTGTTACTGATAGTGTACAATCCATGTGTATATGAGACTGTATACTGCATGATCATCTCACAACTATTCAAGAATGCTATATTGTTGCATCAATGAATAAGGAGGGACTAAAACAGACTGCCCCTGAAGTTGACAACTTGATTTGAAGTAGTTTTGAGTTTAACTCAGGATTGCTATCTGAAACAGGTTTTTATCTTGGGTCATAATACAACCTACTACATCTATGAGTAAACACATTCCCTCATAGTATAATCTCCCCTGTGTTTGTAGGGCAAGAGGGTGGAGTTCTCTCCTTTCTCAATTCTTCATTTTGTTGCCAAACTGTTGTGAATAAAGATAATTATGCTTTTCGCAGGTTGAAGTTTATTGCCATGAATCCTGCCCtgaaggcagaactgagcgaCTCCCGCTAGATGGGCCTCACAATGATTATGAAAACAAGAATGAGCTGTTTGGTCTTCATTTACGGTTTGggctagcagtgtggttaagattagggttaggtttaaaatcagattttatgactgtggctgtgccagctgaTGACCAcgctgcagagctgcctccagggcaagattcatgacaataaatgccaacctgcatcGTTTTCACAGCGTGACATTGGAATCCATACTTTTTGGAATTAACCAACAATAACAAAAGCAGCACCTTTTTTCTAATATTTTATAAGGATGAACATTTCAATGGAAAGGCTGTATTAGTGGCAGACAGCACAATTTAATTGGAGGGTCATATCTGTGTCACTCACCTGCACGTTCCTTCTCCTGAAGATCTTTGTTCTTGTCTTGCAGTTCTTGAAGCTCTCTCTCTTTGATCATTAAAGCTAGTTGCCAAAAGATAACAACTCTGACTCAAGTTCCCTACATCCAGCTACATATAAACAACAGTTACATTAGAAAACCGATGTGAACATTTTCTTTGTGTGAACTAAACTCACCTGAGGTAAAAGCTTTTTCCAAACCTGTAAGATTTCGATTGTAAGCCGCTTGCAGAATTTGGAGCTCTGTGTTTTTGGTTGGCAGGTTGCTGATATCTGATT

Function

NR:

description
CD209 antigen-like protein D isoform X1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1769095 False 1819 lncRNA 0.41 7 38098706 38107429
TU1769094 True 2218 lncRNA 0.40 3 38104996 38107429

Neighbor

gene id symbol gene type direction distance location
LOC110496145 LOC106588474 coding downstream 106337 37978117 ~ 37992369 (-)
ppt1 LOC106588481 coding downstream 167961 37922153 ~ 37930745 (-)
LOC110496137 LOC106570035 coding downstream 243974 37844036 ~ 37854732 (-)
LOC110496134 LOC106511154 coding downstream 301762 37758788 ~ 37796944 (-)
LOC110496154 LOC106588291 coding upstream 14147 38121576 ~ 38152320 (-)
LOC118941154 NA coding upstream 33300 38140729 ~ 38141362 (-)
trnaa-ugc-137 NA coding upstream 188454 38295883 ~ 38295956 (-)
LOC118936476 LOC106588460 coding upstream 381441 38488870 ~ 38491346 (-)
LOC110496164 LOC106588460 coding upstream 394690 38502119 ~ 38505762 (-)
G1546011 NA non-coding downstream 2375 38095976 ~ 38096331 (-)
G1545988 NA non-coding downstream 31155 38065502 ~ 38067551 (-)
G1545989 NA non-coding downstream 33575 38064584 ~ 38065131 (-)
G1545986 NA non-coding downstream 36467 38061927 ~ 38062239 (-)
G1545937 NA non-coding downstream 37334 38059062 ~ 38061372 (-)
G1546047 NA non-coding upstream 38083 38145512 ~ 38145712 (-)
G1545996 LOC106570014 non-coding upstream 49736 38157165 ~ 38159050 (-)
G1546061 LOC106588464 non-coding upstream 81544 38188973 ~ 38192777 (-)
G1546072 NA non-coding upstream 92717 38200146 ~ 38203696 (-)
G1544806 NA other downstream 796532 37301508 ~ 37302174 (-)
G1543346 LOC106588513 other downstream 2086020 36010987 ~ 36012686 (-)
G1543128 LOC106588245 other downstream 2594549 35452618 ~ 35504157 (-)
G1546053 NA other upstream 57821 38165250 ~ 38214049 (-)
LOC110496167 LOC106588455 other upstream 452220 38557052 ~ 38563365 (-)
LOC110496175 LOC104924380 other upstream 567012 38674378 ~ 38676029 (-)
G1546385 LOC106588448 other upstream 660668 38768097 ~ 38773684 (-)

Expression


Co-expression Network