G1546061 (LOC106588464)


Basic Information

Item Value
gene id G1546061
gene name LOC106588464
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 38188973 ~ 38192777 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1769148
ttattttcccAAAATATGTCCACAACGTTTTTCACAGTCCTGTGTGTTCGGCCCCATATAGGGGCTTACAAAACAGTGTCAGGAGATACACATTTATATATAATACTTTTATATgactatttacagtatatatttataacTATTTTATCCAAATCCAGTGGCGACCCTTCATTCAGGGCAGagacccacctgttttgagcccctcctgttgtctgttttgcatgttattttggtatTAATACGTGTTACATATCTTTCAAACAATATAAAATTAAAATtcaatcattgagttaataaagccgcatacaaacatgggtctcttttttgctttcttgagtaaggcagcttcaaaatgcaggtgtttcagcctagctcagtgctttctgtggtggtgaggcagccagcggaaaatacggagcgtaggggttggtaatgttctctagttgcgccgtgactggctcagtgttctgtcactcatggggacactacgtcactgaAAAATCTACGGGTAGAGCAAAACAATTCAAGCCCCTCGGGTGCGGCcttagagttacattagaagtgcccatccaaaaaagctcaaggtcattggccacagataaaattgtCAAATCtcgttatatctaccgtagctttgagtggactgatcatgtcaacatcatactttcaaaatcttagctagcaagctagtcaagcagtcatcatcatgaatcacattgacaatctactggcaaatccttttcaatccttgtcatatgaagagaaattatagataaaacgtatcggtgctcattggacataaatattacacAAGTTGGacatcgcaaattcaacaatgagtgatttggaaggaatcagtggctaactgcaagcgttgcaaagcaatcactagcctgctattcagtggagtgggtgtgtggtccatgtctgggtttaagggtctcttttccaagattaaaaggataaacattcatgctgtcaatccagcaagacttctgccacgttcaaaacaactggaaactcagaactgggaaatctcagacttcagtgagttcaaaaaTAACTCAAAAAGTGAGTTTAAAAAAACTAGCTCCAACtggaaaaatatgttttgaatggtcatcaaAttGGAAGATCACTGGAGGTCaggattcaaccttgtttttttccccagagttcccagttgtctcaaaagcaccataaatccagagaataccagactttgatgacaacgTTTGATGAGGAATGCTATGCCACCTTCCTTGGTCCCTtcccccctcataacttagcctactgttctgacttggtggtgcacatatagcctatagcctgttttagataaatgagctttcattgtctgcttataagccctctttatttatcctacagttctgagggagaatactgtaagaacggactctgttttgaattctgtagctgtacatttcaaaagtacaTAACaagtagttatattgactacgtccgtatTAGCTCGCTCAtcaatgtcttaatcaaaattacagattgcctcttattcGCTCGTCGTCCACAAATGCCATGGTTTGTACATCTTAATTGTCagaagaaaccacatttgtttaagcaagtcagccatatcagctatgtttttttttaagaggctgaatgaactgtttcgctgccagacaaggctctgctgatagccaggtgtagcagtggtaaggattcactccatggtgctgaaaagaaagctttgctgttgggacagctttatataGGCCCttacagtttgtgggcactgtttgtcaccattatagtgctattaatgtattgtttagtgttgtgtagtagctttgctggcatgcatctaaaaaagaAAAttgggagtttgccccaccaagatttacatgctaaaatcaccacatCTAGGTGTGTTATTAATGGTAAATCCTCCTTTAATATTTAGGAAGTTCTGTTTCAATCCGTGGTACATTCATGTGGTTTCTCATAAGGCAGAAATAAGCCAAAACTGAATTACATCAACATAAGCTCTGCCCAATCGTATGATTTGACCCTATAAAGCTTATTTGAAGTGAAACAATGTTCCCATATAGAGATTTCTCATGATGTCTATGGTAAATGGGGATATCTTTAAGAACTGAAACTGAAGCACATGGTTTGTAAACAGCAAAAATAAGCTCTAGTAATTATTCTTTAAGAAATTAAAATGAGTCTGCAAAATGTTGTTACACTGTAAAAAGGTTTCTGATAATCAACATTTGGCTATGATTGTACAAGTGTGATTTTAAGCAATGGATGAAAACTTGACAATGAAtagcaaaaaaaatctgaatattTAAATAAAGTGCACAAGTGCTCATTCATAAATTCACTCGATAGTGGGACAAACAAATACAATCACAAAAAGTCCTTCCATTCTACTATCATTTTCTACTGAAAATGTATATTGTGTCTTTATAGGTCTTTGTGAGTGAGTAGCACACACTttcaatctctcacacacacacacacacacacacacacaccattcgaGTGGGTCAGACAGCTAGCATGTCAGAAAGCCAGTGTTCGTCAGTGTCTGTAAGGCAGGCAGTCAGTCATTCATTCAAGTGGAActgtctgctggttcagtacttGTCCATCTTCCACGGCATCGGATCTCATTAACCCCTCATTTCTTCTTCTCTGTGCAGCTGAGATTCAAGTGCAGATCGCATCTAAAAGTCATGTCTCTGTACAAACTACTGTACAAAACGCAGTTCATGCAGACTCATGGACACAGCAAATAATTCAATTTCAAGATCATTCAAGATCATTCAATTATAAATAGAAAAAAAATTGGAAATCAAGCCTACGAAGTCCAGTACAAATGCCACACTCACACATCCCTAAAAACATCCCCTTTCCATAGTACAAACCCTATTCCCCACAAACCTTCACTCATTGGTGTGCTTGGTGACATTTCACCttgtttccttttttttttttttgcagtatttctTGTGGCAAATTTGTAcgtcttgtttaaaaaaaaaagtttgcttAAGTAGCCAAGGCATTTTTGCACCAAGAAGTAAACAAAAATTGTTGTATTAAATCTCAGAGAGGTAGAACCCTGCCAATTCTCTGCAAGGAGATCGACATGTTGATAGAAAGACAGACACGTGTAGATAGGTGTTGTCTGCAGGTCAGATGTTTTGTAAACAAAAAAAGCAGCAAAAAAAATGACTGAAACGCTCAATCAATCAATGGAGAAAagctaaaacaaaaacattttggaTTTGTGCAATCTTAGAGAGCTCTCAAAGACAGTCGGACTCTTAAACATAGAGGATGACGTTATCCGGGGGACAGTGCAGGCTGTCGGAGGTGACAAGGGGTCTGCAGGTGGCCTGGGGTTGAGAGGGCCGGCAGCTTTTGAGATGAGGCGAATCACAGTCGTCTGACGTCAGCTCGGCGATGTCGTCTGATTGGGTATCGGACATCTCCAAGTCGCTGCGGATGCTCTCGGGCTGGGCCAAAGTGACATCGCGAAGCCCCTCCCTGAGCGACGCCCCTGGAGATAGGCCTAGTGCTGAGCCAAACAGAGCCCCGCCCCTTCTGGAGCTGCAGTCCTGAGGCTCCTCCCCCCCTGAGCCAGGGCATGCTGCCATAGCAGCAGGGGGCGTGTTTAGGTCTTCCTCACTGGTCAAGCAGAGGTGGCTGGGTTTAGTCTCGATGTCCACCTGGATCTCCAGGT

Function

NR:

description
E3 ubiquitin-protein ligase RNF19B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1769148 True 3739 lncRNA 0.41 3 38188973 38192777

Neighbor

gene id symbol gene type direction distance location
LOC110496154 LOC106588291 coding downstream 36653 38121576 ~ 38152320 (-)
LOC118941154 NA coding downstream 47611 38140729 ~ 38141362 (-)
LOC110496145 LOC106588474 coding downstream 196604 37978117 ~ 37992369 (-)
ppt1 LOC106588481 coding downstream 258228 37922153 ~ 37930745 (-)
LOC110496137 LOC106570035 coding downstream 334241 37844036 ~ 37854732 (-)
trnaa-ugc-137 NA coding upstream 103106 38295883 ~ 38295956 (-)
LOC118936476 LOC106588460 coding upstream 296093 38488870 ~ 38491346 (-)
LOC110496164 LOC106588460 coding upstream 309342 38502119 ~ 38505762 (-)
LOC110496165 LOC106588460 coding upstream 323238 38516015 ~ 38518074 (-)
LOC118940976 LOC106588460 coding upstream 325126 38517903 ~ 38519789 (-)
G1545996 LOC106570014 non-coding downstream 29923 38157165 ~ 38159050 (-)
G1546047 NA non-coding downstream 43261 38145512 ~ 38145712 (-)
G1546013 NA non-coding downstream 81544 38098706 ~ 38107429 (-)
G1546011 NA non-coding downstream 92642 38095976 ~ 38096331 (-)
G1546072 NA non-coding upstream 7369 38200146 ~ 38203696 (-)
G1546073 NA non-coding upstream 11405 38204182 ~ 38204511 (-)
G1546186 NA non-coding upstream 155846 38348623 ~ 38349085 (-)
G1546193 NA non-coding upstream 162771 38355548 ~ 38356495 (-)
G1546226 NA non-coding upstream 242210 38434987 ~ 38437752 (-)
G1544806 NA other downstream 886799 37301508 ~ 37302174 (-)
G1543346 LOC106588513 other downstream 2176287 36010987 ~ 36012686 (-)
LOC118941140 NA other downstream 2691991 35492995 ~ 35499681 (-)
LOC110496167 LOC106588455 other upstream 366872 38557052 ~ 38563365 (-)
LOC110496175 LOC104924380 other upstream 481664 38674378 ~ 38676029 (-)
G1546385 LOC106588448 other upstream 575320 38768097 ~ 38773684 (-)
G1546396 LOC106588446 other upstream 583507 38776284 ~ 38787801 (-)
LOC110496208 LOC106588417 other upstream 1432998 39625771 ~ 39641803 (-)

Expression


Co-expression Network