G1546303 (mag)


Basic Information

Item Value
gene id G1546303
gene name mag
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 38563954 ~ 38570730 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1769414
AGGCATGGCCTTTGACCTCTGTGATCCGTTCTGGTTGTGGGCCTCACAGAGGTAGAGCCCGCTGTCCGCTTTGCTGACCAGGAGGACTAGTGTCTGCCCATTGGCCTTCCAGGTCTCCTTCCCACTGATGTCTTTGTACCAGGTGTAGCTCTCCACCGGTGGGTTGGCATCACTCTGGCAGGTCAGGGTCACTGCCCTACCCTCAGGCACAGGCCCTGTTGGGTTGGACAGGACTACAGTGTTTTTAGGGGCATACAGAACATTGAGGGTCAGGTTCCCCTGAGTCGTCTTGGTGGTGCCCCCTGGCTGCAGTGTGTAGCAGGCGGCGCATTTGACCATCAGCCCATGATGCCGGAGGGAGGCGGTAAATGTCAGGATGGAGGTCATGGTCATGAGCCCATCTATACCCTCCTGTAGCCGGCTCTCAACACTTCCACCCAGCCTAGAGGTCCAGGTCAGGGAGGGCGGCAATGTAGGGCAGGGGGCGGGGGCAGAGCAGCTCAGTCTAGCCCACTCCCCCTCCATGATGTTGCCCATAGAGATCAGTTggggtctgggtggggtgtCTGTATGATTGATATTTACACCTGGTAGAAAGTTATACTTGAGGTGATTTGTTCCAGCACATTCCAGCCTAAAGATATATGTGTCATCATATCCTGCAGAGAAACTGTTGAAAATAGTGGTGCAGTTCTTGTTCAACAGAGTTCCTAACATCACTCCCTTGATGATGTTCTTGGCATCCGTTTGGGCTGAGTGGAAAACAATATTTCCCCATTCTGAATGTTTCTTCCAAAGCCCATGGGGTGTGCAGTTGTTCAAGGTAGCATCAAACTCTGCAGGGATCTGGAATCTACATGGGACCATTAGGCAGGATCCACCAACAGCCACAATGCTTTGGGGCGTCCACAGACTCCACTGTTGGCAGAGAGCACCTTTCAACAGAAAAATGGTGAACGCAATTAACCACAGACCCATCTCTGATGTTGTTGAGATTGCCTTCCACAGTAACAATACACTGTGACTGAGTAATGGAGATCATGGATATTGAGATCACAGATATATCCAAAAT

Function

symbol description
mag Enables carbohydrate binding activity and identical protein binding activity. Predicted to be involved in cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in nervous system. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 75. Orthologous to human MAG (myelin associated glycoprotein).

NR:

description
myelin-associated glycoprotein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1769414 True 1072 lncRNA 0.52 5 38563954 38570730

Neighbor

gene id symbol gene type direction distance location
LOC110496167 LOC106588455 coding downstream 589 38557052 ~ 38563365 (-)
LOC110496166 LOC106588455 coding downstream 10022 38478939 ~ 38553932 (-)
zn706 LOC104962755 coding downstream 35446 38522603 ~ 38528524 (-)
LOC118940976 LOC106588460 coding downstream 44165 38517903 ~ 38519789 (-)
LOC110496165 LOC106588460 coding downstream 45880 38516015 ~ 38518074 (-)
LOC110496170 LOC106588454 coding upstream 40723 38611453 ~ 38617573 (-)
LOC110496173 LOC106588288 coding upstream 77630 38648360 ~ 38665538 (-)
LOC110496175 LOC104924380 coding upstream 103648 38674378 ~ 38676029 (-)
LOC110496183 LOC106588442 coding upstream 393357 38964087 ~ 38972431 (-)
LOC110496188 LOC106588437 coding upstream 496134 39066864 ~ 39081723 (-)
G1546291 NA non-coding downstream 12310 38551397 ~ 38551644 (-)
G1546250 NA non-coding downstream 52337 38496929 ~ 38511617 (-)
G1546308 NA non-coding upstream 5402 38576132 ~ 38576346 (-)
G1546312 NA non-coding upstream 9447 38580177 ~ 38580474 (-)
G1546313 NA non-coding upstream 10856 38581586 ~ 38581888 (-)
G1546316 NA non-coding upstream 14219 38584949 ~ 38585149 (-)
G1546330 NA non-coding upstream 33670 38604400 ~ 38604663 (-)
G1546053 NA other downstream 349905 38165250 ~ 38214049 (-)
LOC110496154 LOC106588291 other downstream 411722 38121576 ~ 38152320 (-)
ppt1 LOC106588481 other downstream 640620 37922153 ~ 37930745 (-)
G1544806 NA other downstream 1261780 37301508 ~ 37302174 (-)
G1546385 LOC106588448 other upstream 197367 38768097 ~ 38773684 (-)
G1546396 LOC106588446 other upstream 205554 38776284 ~ 38787801 (-)
LOC110496208 LOC106588417 other upstream 1055045 39625771 ~ 39641803 (-)
LOC110496816 LOC106588265 other upstream 1072125 39642841 ~ 39688750 (-)

Expression


Co-expression Network