G1546380


Basic Information

Item Value
gene id G1546380
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 38695356 ~ 38696026 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1769503
CAGAGTGCAAAAATTCCCACATGCTAACCTGTTGACGGTATAAGGACAGAGACAAATACATTTCCTTACATAATCTTTCAACCTGTTTTAGGAAAACAACAAACAGTCTTAGATGTGGAAATGGTTCGGTAATGCAAATCATCGAAAGATCCTCAGGAGACTACCAGCATTTGGAGCGCAAAACCTGTCAAAATAAATATCCATTATGTAATTCGAAGCAACGGAAGGTCTTGGAGAAGGGGATGGGAATAGAACGAAAAACAATGTCAGACAGGTTCCTCCAAGTGTGGTGCTTGTAGTATAGACAATGAAAACGATTAAATGGGAAAGAGGTGTGGAAGTGGAAGAAGGGGGTATGTAATTGGTTCATATTGTATCATAGAGCCTATCCACACCTACAAATTATCTACATTATCTTCACTTTGATATTGTCTCGCCTGTCATAAACCTGAATTCATGTCACCCATCAGAAAGCCTCACACGTGCAGATCCACATGCCTCTTTGGGTCCTAAAGAGATCTCACATTGAGGCAAAGCCATGAGAGCTCTACTGGGTTAAATAGGAACTTACAATTGAAACATATAAAAGCATAATACAAAAATACAGCAGATATGattttacagtgaaataataaataatattacCTAGTGAGTGTAAGTCAATGTCAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1769503 True 671 lncRNA 0.38 1 38695356 38696026

Neighbor

gene id symbol gene type direction distance location
LOC110496175 LOC104924380 coding downstream 19979 38674378 ~ 38676029 (-)
LOC110496173 LOC106588288 coding downstream 29818 38648360 ~ 38665538 (-)
LOC110496170 LOC106588454 coding downstream 77783 38611453 ~ 38617573 (-)
LOC110496167 LOC106588455 coding downstream 131991 38557052 ~ 38563365 (-)
LOC110496166 LOC106588455 coding downstream 141424 38478939 ~ 38553932 (-)
LOC110496183 LOC106588442 coding upstream 268061 38964087 ~ 38972431 (-)
LOC110496188 LOC106588437 coding upstream 370838 39066864 ~ 39081723 (-)
LOC110496190 LOC106588434 coding upstream 420565 39116591 ~ 39146595 (-)
LOC110496197 LOC106588427 coding upstream 537095 39233121 ~ 39245055 (-)
LOC110496198 LOC106588427 coding upstream 551172 39247198 ~ 39262456 (-)
G1546379 NA non-coding downstream 3579 38691537 ~ 38691777 (-)
G1546376 NA non-coding downstream 5373 38689761 ~ 38689983 (-)
G1546331 NA non-coding downstream 90161 38604930 ~ 38605195 (-)
G1546330 NA non-coding downstream 90693 38604400 ~ 38604663 (-)
G1546316 NA non-coding downstream 110207 38584949 ~ 38585149 (-)
G1546382 NA non-coding upstream 1040 38697066 ~ 38702063 (-)
G1546402 LOC106588449 non-coding upstream 30263 38726289 ~ 38730601 (-)
G1546403 NA non-coding upstream 35187 38731213 ~ 38731508 (-)
G1546404 NA non-coding upstream 38121 38734147 ~ 38734373 (-)
G1546430 NA non-coding upstream 95254 38791280 ~ 38791517 (-)
G1546053 NA other downstream 481307 38165250 ~ 38214049 (-)
LOC110496154 LOC106588291 other downstream 543124 38121576 ~ 38152320 (-)
ppt1 LOC106588481 other downstream 772022 37922153 ~ 37930745 (-)
G1546385 LOC106588448 other upstream 72071 38768097 ~ 38773684 (-)
G1546396 LOC106588446 other upstream 80258 38776284 ~ 38787801 (-)
LOC110496208 LOC106588417 other upstream 929749 39625771 ~ 39641803 (-)
LOC110496816 LOC106588265 other upstream 946829 39642841 ~ 39688750 (-)
G1548367 NA other upstream 1689944 40385970 ~ 40391883 (-)

Expression


Co-expression Network