G1546382


Basic Information

Item Value
gene id G1546382
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 38697066 ~ 38702063 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1769506
ggggacagagcgGGAGAGAAAGATACATAAGTTTTCTTAGTGAAAGCATGCTGTGGCTTGCCCTGTGAGATCAAGTATGGTTGACACGCACGCACATAAGTTTGGTCCACATGGAAACGTTCAGAAACAAAAACACAAAGTGGACACCCAGATGCTTTTGCTTGGTTTTAAGGAGAGCTGACCCTCATCAGATGTAATCAACACATGCATGTCTGCACGCACCCATGTGTGTGCACACCACACACCCGTGGGCAGGCTAAACCATATAACACTAGTAAACATTGTTTTGACATTTGAGGAACATCCCAAAACCCATGTGTCCTCAAGCCACATAACAGTTGAGAACTCTAGCGTTGTCTGTGTCCCACCTGTAGTTTTTTAATCTCTTTCTTGAGGTCGGCTTCATACTTCTCCTTCTGGTTAGCATTGGCTGCATTGTGAAGCTTTTGCCAAATGTCTTCAAACTGTTCCACGCCTTCCGTAACTTTTTTCAAACATCGATCTATTTCACCTTGAAGTTTCCTTTTATCAGCCATGACTGTTGACTAGGATGCTTTCTTCATGCCTTACTTTCACTGGATTTTCCGATTAAGCTTTTCTTTTATTAGTTGACCCCACTCTTTTAAATCGTATTTTCCCAAGTCCTCACGCTATTTTTCTAAATTGTATTAATTATTTTCGCCAAACAATCACTCCGCACATCCAAGATGGCTACCAGGAACACCTCCTCCGCTGTTGCCCTGATGGACTGGAGGCCCGCCTCCCTTGCAAGCGATTGGATCTTCATCCTCATTT

Function

NR:

description
CCR4-NOT transcription complex subunit 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1769506 True 795 lncRNA 0.44 4 38697066 38702063

Neighbor

gene id symbol gene type direction distance location
LOC110496175 LOC104924380 coding downstream 21689 38674378 ~ 38676029 (-)
LOC110496173 LOC106588288 coding downstream 31528 38648360 ~ 38665538 (-)
LOC110496170 LOC106588454 coding downstream 79493 38611453 ~ 38617573 (-)
LOC110496167 LOC106588455 coding downstream 133701 38557052 ~ 38563365 (-)
LOC110496166 LOC106588455 coding downstream 143134 38478939 ~ 38553932 (-)
LOC110496183 LOC106588442 coding upstream 262024 38964087 ~ 38972431 (-)
LOC110496188 LOC106588437 coding upstream 364801 39066864 ~ 39081723 (-)
LOC110496190 LOC106588434 coding upstream 414528 39116591 ~ 39146595 (-)
LOC110496197 LOC106588427 coding upstream 531058 39233121 ~ 39245055 (-)
LOC110496198 LOC106588427 coding upstream 545135 39247198 ~ 39262456 (-)
G1546380 NA non-coding downstream 1040 38695356 ~ 38696026 (-)
G1546379 NA non-coding downstream 5289 38691537 ~ 38691777 (-)
G1546376 NA non-coding downstream 7083 38689761 ~ 38689983 (-)
G1546331 NA non-coding downstream 91871 38604930 ~ 38605195 (-)
G1546330 NA non-coding downstream 92403 38604400 ~ 38604663 (-)
G1546402 LOC106588449 non-coding upstream 24226 38726289 ~ 38730601 (-)
G1546403 NA non-coding upstream 29150 38731213 ~ 38731508 (-)
G1546404 NA non-coding upstream 32084 38734147 ~ 38734373 (-)
G1546430 NA non-coding upstream 89217 38791280 ~ 38791517 (-)
G1546433 NA non-coding upstream 92471 38794534 ~ 38794944 (-)
G1546053 NA other downstream 483017 38165250 ~ 38214049 (-)
LOC110496154 LOC106588291 other downstream 544834 38121576 ~ 38152320 (-)
ppt1 LOC106588481 other downstream 773732 37922153 ~ 37930745 (-)
G1546385 LOC106588448 other upstream 66034 38768097 ~ 38773684 (-)
G1546396 LOC106588446 other upstream 74221 38776284 ~ 38787801 (-)
LOC110496208 LOC106588417 other upstream 923712 39625771 ~ 39641803 (-)
LOC110496816 LOC106588265 other upstream 940792 39642841 ~ 39688750 (-)
G1548367 NA other upstream 1683907 40385970 ~ 40391883 (-)

Expression


Co-expression Network