G1546402 (LOC106588449)


Basic Information

Item Value
gene id G1546402
gene name LOC106588449
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 38726289 ~ 38730601 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1769542
attttttttattgttattatcaATTGAACAGTATGATTCTACAAATGCGAGAATTCACCAATAACCAAAATAAGGGTTGCACGCTTGTGAGATCTTCACTTAATAGTCTTAGAAACAGACATGGGGTTTATCTATTAGATTAATCCCTATACATTTTTCTGAGGTAATACAGTACACCCCTGCCTCATTGTCCCGCAATACAATTAGGGGCCAATAAAGCTATCTCATGTTTACTTCTACTTCCTTCTATCTGGAAAACCTCACGCCACTAAATGTCACCCCACGAGCCACACACCAAAACAACCATTTTATACCATAACCTCCCTCTTACCTTCACCCACACACACCTGGAATCATTTcctcagaccacacacacacacgcatgcaggcacgcacacacgcgcacacacacacattaatcaaCAGTACATTTACAGGCACACAGAATTATGAGGGCGTACTCAACAAAAACATAATCACAACATCAGTAAACCTTCAAAAGTACaataaaaacatacatttaaaataaCTGAATCTTTCTGTGACATAAATATATTTTGCCTCTCTTCGTTTAAGTTTAACAAGATTCCAATTATGGAATCTGAAGTTCTTACTGTAAAAATCATTGGACCATTCTAGTCCTATAATTGGTGATCCATAATCATGTTAGACAACAAGGCAAGTCACAATACATTCTCCAAACTATTCTAGCAAAATCCTCATTCTTTACAATAAATAGTAAAGTTCTTGAAACGAGTGAGATTCCGGTCACATAAATGTAATCTTATAACGAAATGCACAAAttttcacaaaaaaatgtaaacaatggaATTGTATAGCTTTTGCTCTACACCTTGAAATGTGAGAAAAGTAGATTTAGTTACATTTGCTTTGGTGAATGTCACTTTACAAGGACAGCTTTGATTGATGTCCTTTCTGATACTAGGCTTTTGAATCCAAAAAGCCAATATGAATAATAATATCATAGCTTTGGGTTTGAAATAGTTTGTGGATTCTCTGAGAAACACAATTGTCTTACTTGCCATATCCCAAGTCAGATCAAATGTGAGATTCAGCATTCCTGAAAAGAAATGAAAATACCCACCCGGGCACACAAATACAGACGCATGTACATTACACATACACGCCATGACATCATAAGTCAGCACTATGACATCGCAAACACTGGCTTTGACATCTTCATGCAGTTTGTCTTTTCACTTTGATTGCAtctgcttttttttaaatcaagaatACAAAAAGGTTCAAATCCACTAGAAAGATGAATATTCAAAATCCAGGAAACATTGAGCTTCAACAgagaataaaaaataataatagggGAACTAATAATCATAGAGCTTTAAAAACATTGTCTGGCTGAAAGTAATACATTTTTGTCTTTATCCagtcacagttaaaggggcgAGCCAAAATACTATACAAAGATTTTGTAAATACTATGGTCTCATTATGCCTTCAGTCAAAGTTGAGAGTTCAACCCTTTCAAAATTGGCCAAAAATGACCACATCTTCCATGTTATAATCTGTCAAACccacaaaaaaataaacttttgtAAATGTACAAAATACGGCATTAGGTCCACCCCCACCCctgcaatgtaaaaaaaacaatagtaTGATGGCTTTTtgtcacactcaatgtcaacctCACGAGGGCACAAAGTAGCTTTGCAGCATTGACTCTGTTTTCTTCACACTTACAAAATGTGTCAGTCATTTCTGCAGTGTTGCACAAACTTTCTCCAATATTGACACAGAAAAAGCCGACATAGTACAGACCACAGACACACATAAAGAGTTTTCAGAATAGCCCTTGGTGTTGTGTCCATTGTCTTCTGTTCTCCCTTTCCCGCCATTCCTCCAAATATTGTGAACGGCTTGAGTTTCAGAAACAGTCATGTGGAATTCAGAGAAGTCGGAGTAGTGATTGGTATATTAACTACTAACAAATCAATGTTTTACTTCACAATCCTGGTAAACAGCTCAGAAAGGATTATCAATGGAGCAGGAGCTTGACTGGTTTTGGAGATTGTTTTAAGGGACAGACCCATGGGCAGGTATGGCTAAACAAAGCCCTTGCATTAGCCACGAGGTAAATCCTCTGCATGGCAGTGTCCCTCAAAATTAACACATCTTCACTGAGCTTTCATTCTCATGTGGTCAACAATTTTGTTTCGTTTTTATCCCTTTCAGGTGGTCTTTAACTCCTTATAAACGTGACTGACATTGTGTATCGAATAACAGTGTCAAAGCATTTCTGTGCGACTATAAACATAACTGGAATCAGCTCCACAGTTTGGAAACTGACCTCATTTGAGACTTGGGTCTCTATGGGAATGACAGCCATCACGTCGACCAGCCAGCCAATCAGGCGAGGGTGCAAAGGTCATGCAGCAAAGTTATATTTGTGTCAAATCATGCTAATAATAACTGAAGAAATCCAGCCATAATCAAGAGGTTCAACCCTTACATGACCTTATACAAAACGTCTGCAGACTAAGTTATGGCTGTAGTGTGAGATTGTGGTAGCTAGCAACAGTACTCCAAATGTGTCTATTTTCAAGTCGTCCAATCAAAAATTAGGACAGTGACACAGGGCAACTCAAATGTCCACTCAGTGTCAGCCATTAAGTCATCAGGCTATAGCTGTGTGATACCCCCCCCAGAATACACATACTGTCTAACAGGGCTTTATTCctttacaaaaaaacaacaatttacaGTCTTGtactattattttttttttacaaaagtcaAACCACCATCACATTGTTCTGCATTccatctcagtgtctgttcagatTCAAAGACAGTTTCGTTCTCTCTGTCAGAGCAACAAGAAACCCAATAACCATTTAATCCACTAGTAAAAGTCATGTGCTCGGATAATGTTTCAATAGCACGAAAAACTTTGTGAAATTGTTCCTTTTTTGCTCTATACATGGCcctttttctttctccctcctcaaCAATATGGTTGAATATTCTCTTTCCCAAGACTCACAATAACATGAATCAAATCAATAGGCTTCATTCAAAATTCCCTCTAATATTTCTATTTTCTCAATGGTTTCTTTCTATCATTGCCATTTTCTGTGTTTCCTGGCAACAGGTAACAATGGCATCCACTCTTCTCTCACATCTTTCATTCTTGTTGGGACGTAGTATCCCCGtcatatccttctctctctcatcagctTGCCCTTGCCTCTCTTGTTTCTTCTTCTATTCATCTATCTTTCCATCATGCCCCAAttgaccttctcttcctctccctttcctttcctttcctttctgcGTGAACAGGTTCAGCTTGAACATTCTCAACAcgaccttcatctctccttcACTGTTGGCTTTACTCTCTCACACGGTCACCTCGTTCTTACTAGCCGTCCTCAATGTCTGGCCCCCTCCTCCGCCACCGGGGATATATTGGAGCTGTTCGATGGTGTTCTGCCTCTTGGCGGCGAATGCCATCCTCCGCACCTCGTGGCCCGATGTGGGGTGGGAGTTCATCTTGATCATGTGATGGCGGTCCAGCGAGGGTGTGACGCAGATGTTCTGCTGTGATTGGGCCTTGTGGCTGAGGCATCCCATTGTCGGGACTCCCATCCCCCCAAATTCCCCCATCCCGCTCATACCCACCATACCGCCTACCCCTGGCATGCCCATGcccaccatcctctcctccagacGGTCGGGCGAGACTAGGAGTCTCTCGTGGGACTTGCGAAGCGTCTGTGAGGTGGAGCTCTTGCTGGTGGTCATGGCCTTGTAGTACTGGTGCTGCTGGTTCTTGGAGAGTCTGGAGAGGGTGTTGCCCTCGCCAAGCGCTAGGAGCTGGTCCTGGGACATGACCCTCCGCGGGGCCTTGTCAAAGGCAGCCTGGTACCCCGATGACTGGGCTGGCAGAGGGTAGGGGTTGGGGGTGGATGTGGGCACGTGGATATGTGTccgggaggagtggagggggagggtaCCCCTGGCTCCAAGAGTGTAGTCACCGCCCCAGTGGAGGTGGTGCTGGGATGAGTGGAACGACAGAGGGGCGTTGTTAGGTCGTCGCTTCGATGAGTAGTAGCCAGAGTAGTCCTCCAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1769542 True 4125 lncRNA 0.42 3 38726289 38730601

Neighbor

gene id symbol gene type direction distance location
LOC110496175 LOC104924380 coding downstream 50912 38674378 ~ 38676029 (-)
LOC110496173 LOC106588288 coding downstream 60751 38648360 ~ 38665538 (-)
LOC110496170 LOC106588454 coding downstream 108716 38611453 ~ 38617573 (-)
LOC110496167 LOC106588455 coding downstream 162924 38557052 ~ 38563365 (-)
LOC110496166 LOC106588455 coding downstream 172357 38478939 ~ 38553932 (-)
LOC110496183 LOC106588442 coding upstream 233486 38964087 ~ 38972431 (-)
LOC110496188 LOC106588437 coding upstream 336263 39066864 ~ 39081723 (-)
LOC110496190 LOC106588434 coding upstream 385990 39116591 ~ 39146595 (-)
LOC110496197 LOC106588427 coding upstream 502520 39233121 ~ 39245055 (-)
LOC110496198 LOC106588427 coding upstream 516597 39247198 ~ 39262456 (-)
G1546382 NA non-coding downstream 24226 38697066 ~ 38702063 (-)
G1546380 NA non-coding downstream 30263 38695356 ~ 38696026 (-)
G1546379 NA non-coding downstream 34512 38691537 ~ 38691777 (-)
G1546376 NA non-coding downstream 36306 38689761 ~ 38689983 (-)
G1546331 NA non-coding downstream 121094 38604930 ~ 38605195 (-)
G1546403 NA non-coding upstream 612 38731213 ~ 38731508 (-)
G1546404 NA non-coding upstream 3546 38734147 ~ 38734373 (-)
G1546430 NA non-coding upstream 60679 38791280 ~ 38791517 (-)
G1546433 NA non-coding upstream 63933 38794534 ~ 38794944 (-)
G1546437 NA non-coding upstream 69447 38800048 ~ 38800274 (-)
G1546053 NA other downstream 512240 38165250 ~ 38214049 (-)
LOC110496154 LOC106588291 other downstream 574057 38121576 ~ 38152320 (-)
ppt1 LOC106588481 other downstream 802955 37922153 ~ 37930745 (-)
G1546385 LOC106588448 other upstream 37496 38768097 ~ 38773684 (-)
G1546396 LOC106588446 other upstream 45683 38776284 ~ 38787801 (-)
LOC110496208 LOC106588417 other upstream 895174 39625771 ~ 39641803 (-)
LOC110496816 LOC106588265 other upstream 912254 39642841 ~ 39688750 (-)
G1548367 NA other upstream 1655369 40385970 ~ 40391883 (-)

Expression


Co-expression Network