G1545667


Basic Information

Item Value
gene id G1545667
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 38960505 ~ 38965838 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1768664
TCTTCCATGCGCAATTGTTTTTCATTAAAAACCACAGAAACAATTCACCTTCCAATACCCGTTGAACTCTCACTACAAAAAGATCAAATAGATAAAACATCTTACGGTATTTATGAACGGTTACACAGAACACATGAAATGTCCTTGGGTTAATGATTTACAACACTGAAGGCTCGTATGATTCTGAATAGTTCTTTTTTCTCACAATGCAACCTTACACATGTTGACCTCAGAACGTTTTCATATCTCTTGACATAATCCACATGTAGTTGTGTTAccgcctgaattcaaaatggattaaataggtttttttctctctcacccatcgACACATAATAATCccctaaatgacaaagtgaaaacatgtcttTAGAAAcgttttttcaaatgtattgaaaatgaaaaacagaaatatctcatttacataagtattcacacccccgagTCAGTACTTTGAAAGGTGTTTTCatatcccagtgtctggtggaaagcagactgaaccaggctttcctcttggattttgcctgtgcttagctccgttCAGGTTTGCTTTATCCTGAAAAACGACTCAGCCCTtaacgatgacaagcatacccataagatgttgcagccaccactatgcttgaaaacatGGAGAGTGATACTCAATAACATGTTGTatttgatttgccccaaacatgatagtttgtattcaggacaaaaataaaaatgttgccaCATTTCTtgaagttttactttagtgccttgttgcaaacaggatgcatgtttcgtaatgttttttttctgtataGGCTTCCTTCGTTTTTACTCCGataattaggttagtattgtggattaactgcaatgttgttgatccatcctcagttttcttctatcacagacATTAAACTCCGTAACTGTttttaagtcaccattggcctcatggtgaaatccctgaatggtttcctttctctccggcaactgagtagggaaggacgcctgtgtctttATGGtgcctgggtgtattgatacgccatccaaagtgtaattaataacatcacgatgctcaaagggatattcaatgtctgcttttttataacatttttttatccatctaccaataggtggccTACTTTGCGAGACATCgctggtctttgtgattgaatctgtgtttgatattcactgcttaactgagggaccttacatataactaactgtatgtgtggggtgcagagatgaggcagtcattccaaaatcatgttcaacactattattgcaaacagagtgaatccatgcagcttattatgtgacttgttaaggccatttttactcctgaactcatttaggcttgccataacaaagagttcattgactgaagacatttcagcttttcgttTTTTTAATTCATCtgtaaacatttcgaaaaacataattccactttgacattatggggtgttctgcttaggccagtgacaaacatTTTTTGCAATCTAATTCATTGTAAACTCAGACTGTAACGCAACAAGATctggaaaagtaaaggggtgtgaagactttcagaaggcactgcaCCTGGTTAGTAGCCTAAATGCTGCAGTAAATTGTGCCACTTTACCTCTTCAATATGATTGACGATGAAATTGCCTGTTCTTTCAGCCAGAGATGTTTTTAGACAGTGCCCGCTTTAGTAATTTATGGCCATTTCTATAATATGGTCACCCACGTACCTGGAGCAGATGGCGCGTCTAACATTTAAAGGGACATTGAACTCCAAAATCAACATTTGTCAGCTGTTTTTAAGACCTCAAAAGTAGTCTGATGTCAGTGTGAGTCGACACATCCCACGCCATTTGGTTATGTAGATCAAGCTACACAAATGAATGAAAAGGGTAAGCACCGCAGCTCTGGAATTTACATGGTCTTTTACATGACTTTTAAATTGCGGAATATAACTGAATCTACAAGACATGATGGCCTGGGACGTAGACTAATCGTGACATTACCTTTGAGTTCTGAAAATATTTCAATTTCAGAGGGTAACGTCTCtttgatttatttatatatacggtgccttcggaaagtattcagaccccttgtctttttccacattttgttacgtgacatccttattttaaaatgtattaaataacatgttcttactcatcaatctacacacaatacctcataacgaCAAGGCGGAAAGAGGTTTTATACATTTTAGGAAATGTAttgaacaaaaaaaatatcttatttacataagtattcagaccctttactatgataCACGAAATTGAACTACGgagcatcttgtttccattgatcatccttgagatgtttctacaacttgattggagtacaaattcatttgattagacatgatttgtaaaggtcccagagttgacagtgcatgtcagagcaaaaaccaagccatgaggtcaaaggaattgtccgtagagctccgagacaggattgtgttgaggcacagatctggggaagggtaccaaaaaatgtctgcagcattgaaggtctccaaaaacacagtggcctccatcattcttaaatggaagaagtttggaaccaccaagactcgtccTAGAGCACACCGcctggacaaactgagcaatcggaggagaagggccttggtcagggagatgaccaagaactcaatggtcactctgacacagctccagagttcatctgtggagatgagagaaccttccagaaggacaaccatctctgcagcactccaccaatcaggcctttgttagagtggtcagacggaagccactcctcaataaaaggcacatgatagcctgcttggagtttgccaaaaggtacctaaaggactcgcACAAGagcaacaagattctctggtctgatgaaaccaggattgaactctttggcttcaATGCCAagagtcatgtctggaggaaacctgacaccatccctacggtgaagcatggtggtggcagcatcatgctgtgggaatgtttttcagttgcagggattgggagactagtcaggatcaagggaaagatgaatggagcaaagtacagagagatccttgatgaaaacctgctccagagcgctccgaACCTctgactgggatgaaggttcaccttccaacaggacaatgaccctaagcacacaggcaagacaacgcaggagtggcttcgggacaagtctctgaatgtccttgagtggcccagccagagcccagactttaacctgatcgaacatctcttgagaaaaaagctgtgcagtgacgctccccatcctacctgacagagcttgagaggatctgcagagaacaatgggagaaacaccctaaatacaggtgtgccaagcttgtagcgtcatacccaaaaagattcaaggctgtaatcgctgcaaaggtgcttcaacaaaatactgaataaagagtctgaatactaagtaaatgggatatttcaggttttttttgttttaataaatgtagaaaaaaatctaaaaaactgttgttgctttgtcattatggggtattgtttatagattgatgaggggggaaaaacaatgtgatacattttagaataaggctttaacgtaacaaaatgtgtaaaaagtcatggggtctgaatacttcccgaatgcactgtatctgtctATTAAAGGCAGttgtaaaaacattacaatatcaTGGGAttgtgtatgtatttatttaatagAAACTCTAGAATTGTTGTACTGTACTTTCTGTGTAATACATCTGAATTCCAATTACTATCTTTAAAAGTATACTCTCTGATAAGACTGTCGATCACAATATCATCAAAGTTTTGGCAAAAATAATTAAGAAGTCATGTTTacatatttttaaaaaacaactGTAAACAGTTGTTCTTGTTACATTAATTTAATATTATTTTGAATAACTTGAATTTCACACTTGGGGAGATGTTTGAACATACCAGCACATGACATTTTTTGCACACGCAATGTGATATTTTTGCTGTCAACTAACACCTTCGATTCTCCCAAGATATGTGTCAGTAGCTAGGCTTCcttccaattggtgacagatgtTCAGGTGAGTATTCTAAAATGTTCATAAAAACaaatatgtgcattttcccaccagacaTGTTTCCATCAAATGTACTTATTGaagataaaaggctgtgcgtgataaagtagtgcacataaaatacattttgctgTTACATTCCCTtgtaccgaataaaaaatacaaattaaatgggtttccatcgcattttagactctactgatggttttctcacaacaacaacaaaaaggttgCGTATATAGCGTGTTCGCCTACACTGGTATTGTCACTTGAGCTTGAAGCCACGCACGCGCATTtcgctgttggctagagcgcacctATAGCCTaccattattatggacaaaagagcaacattattttttatttgtcaaacggcagccaagcatcgattatcagttcaccagaataagaccctcaatatttattggaaaggagcatcaagctcatcaccttgcactttcaccagcCTGTGAAGTTTGTCATAAAtgatttcatctgtagcctaatagaCTGCATGTTTTCcgacgagtcgtagtgggaggaccacactacatgttaatgcgTGACTCAAAGTTTACTCGATATGATTGTTAAAATCGTTTCCACcgacatttctcgcataattcattTTTACCGACAAAGAAAGATCCCaccatattttgttttgttgacatttggaaagtttaccccTCAAAAAATATGTTTCACgcctgtcatgacattttgttATTCAACATGCATTTTACTCACATAAAAATGTTgaatggaaacctggttaattATTCAGCTTTCATAGGTCAAGAGCAGTATAATGTCCCGTTAATGAGCTCTACTGATTTATGCAAAAtaaggagagaaaaaaacatttatGACGAGGAACATCTTCgtaaaatgtaaaactgaaaaaGACACCATTTCTCAACAACAGTTATAAGACATACAGATAAAGTGCAATACTTCCTTCTCTTCACTAGCTGTCACTTTCGTTTTTGGGGGGAAAACACCTTCGCCAGGGACTGAATGGCAGTGCAAGCAAGAGAAAGAGGATTCCACCCAAAATAAGCATGACCCCTGCACACCCAATACAGGACACTGACCAAGACAGCTCGTGATGCAAAGGCACCGAGTGGTCACTGGCTAGGAAGGAGAGGACCGATTGGTTGAAAACAGTAAGAGATAGGAGCATCAGGAGgcctaagagagagaaagagagggatgaagaacaaaagagagagagagatattagggTCTTGGTGTGTGTGGAGATGGTA

Function

NR:

description
PREDICTED: zinc finger protein 135-like isoform X1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1768664 True 5313 lncRNA 0.39 2 38960505 38965838

Neighbor

gene id symbol gene type direction distance location
LOC110496182 LOC106588443 coding upstream 2219 38946948 ~ 38958286 (+)
LOC110496814 LOC106570002 coding upstream 26586 38902212 ~ 38935725 (+)
LOC110496813 LOC106570003 coding upstream 80237 38817264 ~ 38880268 (+)
LOC110496179 LOC106588446 coding upstream 172675 38776248 ~ 38787830 (+)
LOC110496178 LOC106588448 coding upstream 186797 38754065 ~ 38773708 (+)
LOC118941155 LOC106588441 coding downstream 30004 38995842 ~ 38999455 (+)
si:dkey-14o18.2 LOC106588441 coding downstream 33671 38999509 ~ 39005360 (+)
LOC110496930 LOC106588286 coding downstream 41076 39006914 ~ 39009903 (+)
LOC110496187 LOC106588439 coding downstream 63619 39029457 ~ 39053644 (+)
LOC110496185 LOC106588438 coding downstream 87889 39053727 ~ 39065036 (+)
G1545598 NA non-coding upstream 130815 38829232 ~ 38829690 (+)
G1545597 NA non-coding upstream 131824 38828471 ~ 38828681 (+)
G1545595 NA non-coding upstream 136049 38824228 ~ 38824456 (+)
G1545594 NA non-coding upstream 136422 38823876 ~ 38824083 (+)
G1545688 NA non-coding downstream 49051 39014889 ~ 39020160 (+)
G1546672 NA non-coding downstream 265860 39231698 ~ 39232206 (+)
G1546707 NA non-coding downstream 294434 39260272 ~ 39260791 (+)
G1546717 LOC106588422 non-coding downstream 324344 39290182 ~ 39290983 (+)
G1546713 LOC106569985 non-coding downstream 392573 39358411 ~ 39372481 (+)
LOC110496176 LOC106588451 other upstream 269236 38677975 ~ 38696088 (+)
G1545533 LOC104965079 other upstream 284501 38675027 ~ 38676004 (+)
LOC110496158 LOC106588463 other upstream 756050 38193174 ~ 38204538 (+)
G1544455 NA other upstream 1904018 37055983 ~ 37056487 (+)
G1544137 NA other upstream 2097322 36862923 ~ 36863183 (+)
G1546605 LOC106588434 other downstream 150650 39116488 ~ 39120019 (+)
G1546641 NA other downstream 167281 39133119 ~ 39146252 (+)
G1546817 LOC106588418 other downstream 501616 39467454 ~ 39469365 (+)
G1547334 LOC107666349 other downstream 795375 39761213 ~ 39761503 (+)

Expression


Co-expression Network