G1546550 (LOC106588439)


Basic Information

Item Value
gene id G1546550
gene name LOC106588439
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 39050510 ~ 39053620 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1769700
ctttcacacacagacacagtacattgattgattaaacCAAGTAAGATGCTGACTTTGTATTTGCCAAGGATAGTATCTGTACAGAAGATAtcaaaggttgtgtgtttgttAGATGTGTGATGTTTTATTTAACAACAGTATATTCATATATACAAACACAAGTGAAACAAACACACGTGACATATAGGGCTGTATGGTTGTTGTTAGTTTGTTGTAATTTTTCATTATGTCTCATAGGGCATTTCAAAGCCAGATTTATACTGCTTGtgtgatacatttttttcaatACAGGAAAATGACAAAATGGATTCAGTAGTGTGCTTTTCTACACTTCACGTGATCTCGATATTTATGAATTAGACCATATTTTTCAATTCAATATCAATGTTGATTATTTCATCATTTTAATTGTTTATGGCTGGGCTATAGACCTTGCTTAAATGCCTCTTTGTTTGGTGCCTCGTGGAGAATAAGAGTACAAGACTTTGGAAGCAGGAAGAacgtgttcacacacacacacacacacacatacagtacacattagCTGAAGAAGAGGCACAAATAAGCAGCAGAAACAAGGAACTCACAAACACAATCACCCAAAGTAAACGGAAGGCCATGAAACACAGGCCAGGAACAAAAATAAACATCAAAGCAATACCAACTGCATTGGTAAAAATCCATTTCAAAACAACATGCTTTTCTGATGTAAAATGGAATAGATTTCTATGACAATATAGGATACAATGATCATCAACTcataaatacacttttttttagGCACACACTGGGGACAGCATAAGGTGGATACTGAACAAGTGGAAGGCATGTggaaagtggaagagagagggagagtgagggaagcAGTGTTGTGGAGCAGTGGTAAGggaattgttttttttaattatcCAGTGTCCATTTTGACATAAATAATACTTTAACACAAAGTTAATAGAGTAATGTATGTCAATGCTTCAGTGTATTAATAGGAAACAATCCAATActtgttctctctttccttctctttttcaCTCATTGGACGATGGGCACCCCATAAGCCAGAACAAGCCCACATTCAACCACTGCAGTcaacatataaatataattttgaaaatacatatttacaAATAAATTCTCTCCTAACTTTTTACAATAAGTGAATGTGCATAAGGTAACTGAGTATGGTTCAGTTAGTAAAGTACCACAGTCTTGTTAACAGTAGTGAGGGAGGGCTGCCATTGAAGAACGTTTTTTCCTTGGAGGAGAGGTCAAATACTGAATACTACCATCAAAGGAATGTATTTTCCCAGTGCAACACATACACATATCCACAATATGTTATATAAATAAAGAACAAAGCCATGACCCTGTCATCTTTCTAGGCAAAATAAATTGTGAAAGTCTAATTTACACAACCACAAAAAAAAagtaatattttttttgtaacacacatatatatatatatatatatatctatactacagtatatctatacaATAAAATATTTTAATAAATTTCGATTTTTAACAACATTCCACAAGGTTAATCTTCAGACAAAGTGTCACAAAGTAGAGTATAGACTTAAAGGGGAGTCATTAAAAAGCATTGTGCACAAATGCTCACATTTGGTCACAACTAAAGTCCCATTGTGTTATTCCAAATACAGACTGAATAGATAACCTTCATAATCATATTCAACATTTTTGACTGAATGCTCTCACAGCAGAACAATTCAAAATTACACTCAATTCCACAGAGAAAACCGATGGAGTCCTTTGCTCTCTATGGTTGATTCTTATCGAATCCAAGTTCATAACATCGCGACTCATATCACAATCTATTATAATCTAATATCCAAAATAACTATCTGTCCCCTTAGACAGTATAGTTAATGCAATTCTACTCCCTCAGGTAAATATTTCTCTAATTATTCTTTATGTTGATTCATTTGCCATAAATCGCTTTTTGAAGAGTATATTAGcaatcttggaattttaattgatttCTATTCTATTAGTTAATAATTTGGTTAATAAGGTGCACCTAAAGCAAGTTAAAGTGAAAGAAgtaccatatctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctttatttatgcCATCTGAATGTAATTTTTAGCAGTGGATTCTTATGTTGAGTAGGGTATTAGCACATTATTTTGTTCTCAAATACAACAACTGTTGAAATTAAATGTCAAGTACGATCATTCTGGGATTATTGGGTTATTTAAAAAAGCTATTTCTAAAACCATGAAAACCAACTAATGCAATTGACCCTAATCTACTGTTTCACTGTTAAAACTATTGTAAACTATTGTTTACCAGAAACACTATTGAGGTTGTTTGCTTTGACTAGACCCACTTTGGCTTTACTAAAAGCTGTTTAAATGATGATGCACTCAGGAAAAGAAGGCAACAAAattaaaatacacattttgaCCTATAGGTCGAGAAATATATTACACATGACAGAaagaaatgtgaaaaaataaCACTAATTCATTCTAGCTACTGTATCCACCCAAAAATGTGTGTTGTGGCTTTCCATGTACACGAACGGTATATTTCCCTTCACGTCAAACACTCGTCCCCATGTACCTGAACTGCCAAAGAATTAAGCTTTGATCTGTTTTTGAACCAGCTGACCCCCAACCCTTGACCTTTAAGCATTGACCCAACACAGGATTCTACAAGCTCTCCTGTACAATTGAGTTGGACCTATCCTCTGCTGCTGCCGCCTCCACCAATGGAACCTTCTCCTTGATGGGCGAGGCAGGAAGTGTTACGCTGATACTAGTGGGAGGAGCTCCCACAGAGGTGGCAGGGGGCAGGGTGGCCCCGCCAAACTCACGGGCGATCTCGTCAAAGGTCTTGCCCTTGGTCTCTGGGACTTTGATGAAGgtgaagatgaagaagaagatgagTAAGATCATGAAGATGATAAAGACGTAAGGCCCACACAGC
>TU1769701
ctttcacacacagacacagtacattgattgattaaacCAAGTAAGATGCTGACTTTGTATTTGCCAAGGATAGTATCTGTACAGAAGATAtcaaaggttgtgtgtttgttAGATGTGTGATGTTTTATTTAACAACAGTATATTCATATATACAAACACAAGTGAAACAAACACACGTGACATATAGGGCTGTATGGTTGTTGTTAGTTTGTTGTAATTTTTCATTATGTCTCATAGGGCATTTCAAAGCCAGATTTATACTGCTTGtgtgatacatttttttcaatACAGGAAAATGACAAAATGGATTCAGTAGTGTGCTTTTCTACACTTCACGTGATCTCGATATTTATGAATTAGACCATATTTTTCAATTCAATATCAATGTTGATTATTTCATCATTTTAATTGTTTATGGCTGGGCTATAGACCTTGCTTAAATGCCTCTTTGTTTGGTGCCTCGTGGAGAATAAGAGTACAAGACTTTGGAAGCAGGAAGAacgtgttcacacacacacacacacacacacacacacacacacatacagtacacattagCTGAAGAAGAGGCACAAATAAGCAGCAGAAACAAGGAACTCACAAACACAATCACCCAAAGTAAACGGAAGGCCATGAAACACAGGCCAGGAACAAAAATAAACATCAAAGCAATACCAACTGCATTGGTAAAAATCCATTTCAAAACAACATGCTTTTCTGATGTAAAATGGAATAGATTTCTATGACAATATAGGATACAATGATCATCAACTcataaatacacttttttttagGCACACACTGGGGACAGCATAAGGTGGATACTGAACAAGTGGAAGGCATGTggaaagtggaagagagagggagagtgagggaagcAGTGTTGTGGAGCAGTGGTAAGggaattgttttttttaattatcCAGTGTCCATTTTGACATAAATAATACTTTAACACAAAGTTAATAGAGTAATGTATGTCAATGCTTCAGTGTATTAATAGGAAACAATCCAATActtgttctctctttccttctctttttcaCTCATTGGACGATGGGCACCCCATAAGCCAGAACAAGCCCACATTCAACCACTGCAGTcaacatataaatataattttgaaaatacatatttacaAATAAATTCTCTCCTAACTTTTTACAATAAGTGAATGTGCATAAGGTAACTGAGTATGGTTCAGTTAGTAAAGTACCACAGTCTTGTTAACAGTAGTGAGGGAGGGCTGCCATTGAAGAACGTTTTTTCCTTGGAGGAGAGGTCAAATACTGAATACTACCATCAAAGGAATGTATTTTCCCAGTGCAACACATACACATATCCACAATATGTTATATAAATAAAGAACAAAGCCATGACCCTGTCATCTTTCTAGGCAAAATAAATTGTGAAAGTGCTTGGAGAAAAATAACTACGTCTAATTTACACAACCACAAAAAAAAagtaatattttttttgtaacacacatatatatatatatatatatatctatactacagtatatctatacaATAAAATATTTTAATAAATTTCGATTTTTAACAACATTCCACAAGGTTAATCTTCAGACAAAGTGTCACAAAGTAGAGTATAGACTTAAAGGGGAGTCATTAAAAAGCATTGTGCACAAATGCTCACATTTGGTCACAACTAAAGTCCCATTGTGTTATTCCAAATACAGACTGAATAGATAACCTTCATAATCATATTCAACATTTTTGACTGAATGCTCTCACAGCAGAACAATTCAAAATTACACTCAATTCCACAGAGAAAACCGATGGAGTCCTTTGCTCTCTATGGTTGATTCTTATCGAATCCAAGTTCATAACATCGCGACTCATATCACAATCTATTATAATCTAATATCCAAAATAACTATCTGTCCCCTTAGACAGTATAGTTAATGCAATTCTACTCCCTCAGGTAAATATTTCTCTAATTATTCTTTATGTTGATTCATTTGCCATAAATCGCTTTTTGAAGAGTATATTAGcaatcttggaattttaattgatttCTATTCTATTAGTTAATAATTTGGTTAATAAGGTGCACCTAAAGCAAGTTAAAGTGAAAGAAgtaccatatctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctttatttatgcCATCTGAATGTAATTTTTAGCAGTGGATTCTTATGTTGAGTAGGGTATTAGCACATTATTTTGTTCTCAAATACAACAACTGTTGAAATTAAATGTCAAGTACGATCATTCTGGGATTATTGGGTTATTTAAAAAAGCTATTTCTAAAACCATGAAAACCAACTAATGCAATTGACCCTAATCTACTGTTTCACTGTTAAAACTATTGTAAACTATTGTTTACCAGAAACACTATTGAGGTTGTTTGCTTTGACTAGACCCACTTTGGCTTTACTAAAAGCTGTTTAAATGATGATGCACTCAGGAAAAGAAGGCAACAAAattaaaatacacattttgaCCTATAGGTCGAGAAATATATTACACATGACAGAaagaaatgtgaaaaaataaCACTAATTCATTCTAGCTACTGTATCCACCCAAAAATGTGTGTTGTGGCTTTCCATGTACACGAACGGTATATTTCCCTTCACGTCAAACACTCGTCCCCATGTACCTGAACTGCCAAAGAATTAAGCTTTGATCTGTTTTTGAACCAGCTGACCCCCAACCCTTGACCTTTAAGCATTGACCCAACACAGGATTCTACAAGCTCTCCTGTACAATTGAGTTGGACCTATCCTCTGCTGCTGCCGCCTCCACCAATGGAACCTTCTCCTTGATGGGCGAGGCAGGAAGTGTTACGCTGATACTAGTGGGAGGAGCTCCCACAGAGGTGGCAGGGGGCAGGGTGGCCCCGCCAAACTCACGGGCGATCTCGTCAAAGGTCTTGCCCTTGGTCTCTGGGACTTTGATGAAGgtgaagatgaagaagaagatgagTAAGATCATGAAGATGATAAAGACGTAAGGCCCACACAGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1769700 False 3025 lncRNA 0.36 3 39050510 39053620
TU1769701 True 3061 lncRNA 0.36 2 39050510 39053620

Neighbor

gene id symbol gene type direction distance location
LOC110496183 LOC106588442 coding downstream 78079 38964087 ~ 38972431 (-)
LOC110496175 LOC104924380 coding downstream 375133 38674378 ~ 38676029 (-)
LOC110496173 LOC106588288 coding downstream 384972 38648360 ~ 38665538 (-)
LOC110496170 LOC106588454 coding downstream 432937 38611453 ~ 38617573 (-)
LOC110496167 LOC106588455 coding downstream 487145 38557052 ~ 38563365 (-)
LOC110496188 LOC106588437 coding upstream 13244 39066864 ~ 39081723 (-)
LOC110496190 LOC106588434 coding upstream 62971 39116591 ~ 39146595 (-)
LOC110496197 LOC106588427 coding upstream 179501 39233121 ~ 39245055 (-)
LOC110496198 LOC106588427 coding upstream 193578 39247198 ~ 39262456 (-)
LOC110496200 LOC106588422 coding upstream 215964 39269584 ~ 39295941 (-)
G1546577 NA non-coding downstream 10583 39030040 ~ 39039927 (-)
G1546480 NA non-coding downstream 114788 38932176 ~ 38935722 (-)
G1546516 NA non-coding downstream 122636 38925113 ~ 38927874 (-)
G1546451 NA non-coding downstream 230294 38819856 ~ 38820216 (-)
G1546446 NA non-coding downstream 240161 38810081 ~ 38810349 (-)
G1546924 NA non-coding upstream 64134 39117754 ~ 39187626 (-)
G1546932 NA non-coding upstream 178070 39231690 ~ 39232195 (-)
G1546933 NA non-coding upstream 178939 39232559 ~ 39233080 (-)
G1547038 NA non-coding upstream 209301 39262921 ~ 39263179 (-)
G1546396 LOC106588446 other downstream 262709 38776284 ~ 38787801 (-)
G1546385 LOC106588448 other downstream 276826 38768097 ~ 38773684 (-)
G1546053 NA other downstream 836461 38165250 ~ 38214049 (-)
LOC110496208 LOC106588417 other upstream 572155 39625771 ~ 39641803 (-)
LOC110496816 LOC106588265 other upstream 589235 39642841 ~ 39688750 (-)
G1548367 NA other upstream 1332350 40385970 ~ 40391883 (-)
G1548517 NA other upstream 1586555 40640175 ~ 40685641 (-)
LOC118941164 LOC106588367 other upstream 1852067 40902519 ~ 40908744 (-)

Expression


Co-expression Network