G1546672


Basic Information

Item Value
gene id G1546672
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 39231698 ~ 39232206 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1769857
CCGTTTAATATGGAATTCACGCGCGCTACTCTCGCAAGCAAATTGACACCGTCGCTCTGTGTGGTTTCGGCTTAAATCCTATCAACTGATTTGAGAcagtgtatggctgtggattgactaaattgtttgaatggaatgttggcatatttACGGTTAATAAAAAAAATGGAGTCATTCCTCTGAAACTGTCTTGCAAGCTAACAAAAATACAGTGCAGGTAAATTCTTCACAATATCTTAccacagcactggcaaaccatgCTGACAAACTCCCTGACCAATATGACTGACCTTTGGaccatcataagaaggttcatgAACATTCTAGTATTCAAATTCCTAATTATATAAATGAAATTGGCATAATTTCTAATCCCCTTTAATGTATtcccccaccaccactcctgaTTGCACTAAACTAATGGACAACCATAATTCTACTAACAGCTATTTTactcacatgtacagtacatgcagttaaataattatacatacagtaccagtcaaaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1769857 True 509 lncRNA 0.37 1 39231698 39232206

Neighbor

gene id symbol gene type direction distance location
LOC110496196 LOC106588428 coding upstream 1777 39221315 ~ 39229921 (+)
LOC110496194 LOC106588429 coding upstream 13490 39208209 ~ 39218208 (+)
LOC110496193 LOC106588432 coding upstream 28584 39195633 ~ 39203114 (+)
LOC110496191 LOC106588431 coding upstream 44070 39181006 ~ 39187628 (+)
LOC110496189 LOC106588436 coding upstream 119218 39084396 ~ 39112480 (+)
LOC110496201 LOC106588424 coding downstream 94631 39326837 ~ 39357124 (+)
LOC118940977 NA coding downstream 353664 39585870 ~ 39586862 (+)
LOC118941156 ssl-2 coding downstream 387513 39619719 ~ 39622185 (+)
LOC110496217 LOC106569969 coding downstream 833054 40065260 ~ 40077268 (+)
kifc1 LOC106588407 coding downstream 863622 40095828 ~ 40101459 (+)
G1545688 NA non-coding upstream 211538 39014889 ~ 39020160 (+)
G1545667 NA non-coding upstream 265860 38960505 ~ 38965838 (+)
LOC110496814 LOC106570002 non-coding upstream 295973 38902212 ~ 38935725 (+)
G1545598 NA non-coding upstream 402008 38829232 ~ 38829690 (+)
G1545597 NA non-coding upstream 403017 38828471 ~ 38828681 (+)
G1546707 NA non-coding downstream 28066 39260272 ~ 39260791 (+)
G1546717 LOC106588422 non-coding downstream 57976 39290182 ~ 39290983 (+)
G1546713 LOC106569985 non-coding downstream 126205 39358411 ~ 39372481 (+)
G1546759 NA non-coding downstream 142475 39374681 ~ 39384881 (+)
G1546769 NA non-coding downstream 154265 39386471 ~ 39386732 (+)
G1546641 NA other upstream 85446 39133119 ~ 39146252 (+)
G1546605 LOC106588434 other upstream 111679 39116488 ~ 39120019 (+)
LOC110496176 LOC106588451 other upstream 540429 38677975 ~ 38696088 (+)
G1545533 LOC104965079 other upstream 555694 38675027 ~ 38676004 (+)
LOC110496158 LOC106588463 other upstream 1027243 38193174 ~ 38204538 (+)
G1546817 LOC106588418 other downstream 235248 39467454 ~ 39469365 (+)
G1547334 LOC107666349 other downstream 529007 39761213 ~ 39761503 (+)
G1547652 LOC106588410 other downstream 803311 40035517 ~ 40040594 (+)
LOC110496221 LOC106588406 other downstream 873789 40103731 ~ 40110006 (+)

Expression


Co-expression Network