G1547052


Basic Information

Item Value
gene id G1547052
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 39374576 ~ 39384675 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1770270
GGAGTTCAAGagggccgaatacttttgcaaggcactgtatgtgtcccACAGGAATATGACTATCGCCATTTTGGACCTATGATGACACATGCTAACCAGCAGCACCCTCCTACTTTGCCCCAAAATGGCTGCAATCACCAGGCAAATCCATGATGTAAAAACAAAATGCAACGCCTGTATTATACTTCAGGGAAAAAGCGTTGTTGAGGTGTTACATATCAGATACCAATACATTCCCTCCCAACTGCATTTTGTAGCACATTTACACATCTGCAGTAtctctgttaaaaaaaaaatggattgcTTGTTGAAAAACCTTTCTAATAAACATTGACTTCTGCATTAACA
>TU1770271
gccccccccccccccccccccccccgaatacttttgcaaggcactgtatgtgtcccACAGGAATATGACTATCGCCATTTTGGACCTATGATGACACATGCTAACCAGCAGCACCCTCCTACTTTGCCCCAAAATGGCTGCAATCACCAGGCAAATCCATGATGTAAAAACAAAATGCAACGCCTGTATTATACTTCAGGGAAAAAGCGTTGTTGAGGTGTTACATATCAGATACCAATACATTCCCTCCCAACTGCATTTTGTAGCACATTTACACATCTGCAGTAtctctgttaaaaaaaaaatggattgcTTGTTGAAAAACCTTTCTAATAAACATTGACTTCTGCATTAACA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1770270 False 348 lncRNA 0.40 2 39374576 39384675
TU1770271 True 357 lncRNA 0.43 2 39374576 39382376

Neighbor

gene id symbol gene type direction distance location
LOC110496202 LOC106569985 coding downstream 2071 39358398 ~ 39372505 (-)
LOC110496203 LOC106588426 coding downstream 47538 39308819 ~ 39327038 (-)
LOC110496200 LOC106588422 coding downstream 78635 39269584 ~ 39295941 (-)
LOC110496198 LOC106588427 coding downstream 112120 39247198 ~ 39262456 (-)
LOC110496197 LOC106588427 coding downstream 129521 39233121 ~ 39245055 (-)
LOC110496205 LOC100136448 coding upstream 4540 39389215 ~ 39413466 (-)
LOC110496206 LOC106588419 coding upstream 49110 39433785 ~ 39452164 (-)
LOC110496815 LOC106588418 coding upstream 82751 39467426 ~ 39566572 (-)
LOC110496207 LOC100136435 coding upstream 229995 39614670 ~ 39616840 (-)
LOC110496208 LOC106588417 coding upstream 241096 39625771 ~ 39641803 (-)
G1547041 NA non-coding downstream 105758 39268616 ~ 39268818 (-)
G1547039 NA non-coding downstream 110322 39263873 ~ 39264254 (-)
G1547038 NA non-coding downstream 111397 39262921 ~ 39263179 (-)
G1546933 NA non-coding downstream 141496 39232559 ~ 39233080 (-)
G1547103 NA non-coding upstream 29250 39413925 ~ 39414131 (-)
G1547104 NA non-coding upstream 29498 39414173 ~ 39414433 (-)
G1547107 NA non-coding upstream 31875 39416550 ~ 39416805 (-)
G1547131 NA non-coding upstream 68613 39453288 ~ 39453517 (-)
G1547132 NA non-coding upstream 69229 39453904 ~ 39454184 (-)
G1546396 LOC106588446 other downstream 586775 38776284 ~ 38787801 (-)
G1546385 LOC106588448 other downstream 600892 38768097 ~ 38773684 (-)
LOC110496175 LOC104924380 other downstream 698547 38674378 ~ 38676029 (-)
LOC110496167 LOC106588455 other downstream 811258 38557052 ~ 38563365 (-)
G1546053 NA other downstream 1160527 38165250 ~ 38214049 (-)
LOC110496816 LOC106588265 other upstream 258180 39642841 ~ 39688750 (-)
G1548367 NA other upstream 1001295 40385970 ~ 40391883 (-)
G1548517 NA other upstream 1255500 40640175 ~ 40685641 (-)
LOC118941164 LOC106588367 other upstream 1521012 40902519 ~ 40908744 (-)

Expression


Co-expression Network