G1546793


Basic Information

Item Value
gene id G1546793
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 39433817 ~ 39437022 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1769988
CGTTTAGATTCAAGTACAGTGATACAGTTGTCCCATTGTTTTAACATCCAACCAGACcaaaagtacatttaaaaaaaagccaTTGTTGACTCAAGGCAAATGAACTTGATAGACTGGTCACCACCAAGAGCATCCTGCACCTTGTAGTGTTTGTTTATCCAACCGTGCATTCGTATTCCCGTCCCAATTACACTAGACAAGTTAGCTCATTTTATATGAACGCGTCTGCAAGAGGATCAAATCCAGTTCAAATGTAAATGTGTGGTTTCAAATCCAGTCCATTTTGGTTCAGATAAAATATGGATGCTTTAATTAACCCACCCCTGAGCTCAGGGTGTCGGTTTCTCACCCTGAGCTCACAACATGCCCACTGCAGGGATTCTCTTTCTCTGTTAAAGCAGGTTTTTACAtcgtttctttctttttttctgagCCATATCTGtgaagaaaggggggggggggactggtgtggcaggagaggagagcaccattgcatacacacacaccaactgcaGCAAGACCGCCTTTATGTTCTGTGTCATTccaaaaccagagagagagagagagagagaggtgattggCTGTTTAGAAACAGAGTCTGCGGTTGGCTAGCGAGACATAGGTAGGAGAGTTCCATTTGCAAAGAAGCAAGACTAACAAAACACAAGTGGCAGTAAGGACAGaagaataaataaaacaaaaaaatctcAGAGGCGTGTCCATACAAGGAGAAAAATGATGAATGAATATAGGCTGGTCAGTCATTAAAGAATAATACGCCTTTCTGTAAACAACCTGAGGAAGCTTCTGACATTTGAAATATTCAAATGAAGATAAAGCAAGAAACCCCAAATCGACAACAGAATGTCAAGCCTAAAAaatacaatgtttattacagtatACATTTACATAAAGTAAATCATATTTACAAAGGTTTATTGCTCTTCCATTTTTCACTAAAACACTTCAGGTAAAAAGGTGTCAATTTCTCCCTGTTTATCTTCAAGAACTAAACCAACGAGACGAAAACGGAACAATCTCATTCTTCCTCAGTCAATCAAGTTTCTTACTTAGATCTCTATGAAAACTAATGACTAGTACATGCAGTGGCTTTGACCAGTGTACCTGCTGAACAAgagtataaacacaacatgcaacaatttctaagattttactgagttacagttcatataaggaaatcagtcaattaaaataaattatttaGGCCCTAATAtagggatttcacatgactgggcgtGGGCGCAGCCACATGACATAGGCCCacacactggggagccaggcccagccaatcggaATGagttactgccaaattctctaaaacgacgttggaggcggcttattcaattctctgacaacagttctggtggacattctggtagtcagcatgccaattgcatgctccctcaaaacttgagacatctgtggcattgtgttgtgtgacaaaactgcacattttagagtggccttttattgtccccagcacaagatgcacctgtggaatgatcatgctgtttgatcAGCTTCctgatatgacacacctgtcaggtggatgtgttatcttgacaaaggataaaattctcactaacagggatgttaacaaatttgtgcacaacatttgagagaaataagctttttgtgtgtatggaacatttctgggatatttttttcagttaaTGAATCATGGGACCAGCACTTAACATGTTGCGTttaaatttttgttcagtgtacttggTTACCGTGTTCAAGTTCTGGTGTCTGTGCAtctgtctttatgtttgaatatACGGAATGCTTTATGTAATTACATGTTTTAACAGAATAGGTCAAACCACAAGAGTAAACACCTTCCACAGCCAAGTGACATTACCAGGCCTACAAAACCCCCCATTGACTTTAAATAGTGGGAGAAAACTTAACAGATAAAATAACTTTTAACCCATAGTTCTGTGTGTTCTAATTGAAGGTGTGTATGACTGGTTGTCACATACCTGTGTGTGCTATCAAACAACTAATTGTTTGACAGCAAACAACTTATTATCATTCATTGGATTAAAAAAACAAACCCCATCAGCTTAATGTATTCATCGGAGGGTTCAAAAAACACTAGTGACAAAAACAAAGCTAAAAAGCAGGTCAAAAGGGGTTGTGTTACAGTTAACATAAAATGTCACTTGTTCATTCATGTTTCTAAAAACATAGTTTTGTCTTTTTGGGGGGTTTAAACTACAAAAGGCCAAATGATTAAAACATTTGAAAAGTGGAATATAGCAAATAACAGAACTCAGTAGTACAGCCCTGAAGCACACACATTTTCCCTCCAAAACCAAAGAATGTCTTTGCCCACAAAAACATTCCTacctttttttttctcttctcccCTGAATATTTGCTGCGTGTTGGATCTTGTCATCGCCGTCTTCACATTAAGTTCTTACGAGCAGATCTTGTAGAGGTAAAGACGGAAaataaaaaggggggggggggggggggagcaatcCTTGGGATCAGGCAGACACCTGTCTGTGGCAACGTCAGATTTATGAACCTGTGTCCGTCAGGTGTTTGAAAGATTCAGACGATACTTGCCCATTCGCCTTGATGAGTGTGCTCAGTGAGGAGGGACCAAGTGACTAAGCCCTACAGTCCCGTGGGACTCCAGTGTATTACACCACTAGATCCTCCTCCAGTTTCTCACCATCGCTCAAGTCTATGATGCGATTCATTTCCCAAGGAATGTGTGGAGAAATTGATGTAAGCGATGACATTCCTGTTTTGCAAAAAAAGGGAAGAGTCAGCATTCTCAGGGAATGTTGGAAGCTGTTTACCTTAGCCaatgggatggatggagaggagggaaggtGTGTGAAGGAAAATAAGTCCATACAGACAGATAGATGTTAGATGGGATAGATGTGTTGGTGCTTTCGGGTCCAATCCAAGCCCAAGGACACCACCATTTTCAACAGAGATGACCATGTCTTGTGATGTGTGAGTGTTTTTGGAGAGGGCGATGTTGTGACCCCTGGGGTTATATGGACTTTGTGATGAATAGCTTGTATGGCTGGACAGACCTGGGGGAGGTTTCCACCTGAGTGGTCTTCCCGACTGCAGAGATTGATCTTGAGGGGAATAATTGGCTGATTCTTTGGGCT

Function

NR:

description
hypothetical protein EH28_06569

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1769988 True 3173 lncRNA 0.41 2 39433817 39437022
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110496201 LOC106588424 coding upstream 76693 39326837 ~ 39357124 (+)
LOC110496196 LOC106588428 coding upstream 203896 39221315 ~ 39229921 (+)
LOC110496194 LOC106588429 coding upstream 215609 39208209 ~ 39218208 (+)
LOC110496193 LOC106588432 coding upstream 230703 39195633 ~ 39203114 (+)
LOC110496191 LOC106588431 coding upstream 246189 39181006 ~ 39187628 (+)
LOC118940977 NA coding downstream 148848 39585870 ~ 39586862 (+)
LOC118941156 ssl-2 coding downstream 182697 39619719 ~ 39622185 (+)
LOC110496217 LOC106569969 coding downstream 628238 40065260 ~ 40077268 (+)
kifc1 LOC106588407 coding downstream 658806 40095828 ~ 40101459 (+)
LOC110496221 LOC106588406 coding downstream 666709 40103731 ~ 40110006 (+)
G1546774 LOC100136448 non-coding upstream 24664 39389340 ~ 39409153 (+)
G1546772 NA non-coding upstream 44812 39388689 ~ 39389005 (+)
G1546770 NA non-coding upstream 46716 39386869 ~ 39387101 (+)
G1546769 NA non-coding upstream 47085 39386471 ~ 39386732 (+)
G1546759 NA non-coding upstream 48936 39374681 ~ 39384881 (+)
G1546808 NA non-coding downstream 16717 39453739 ~ 39454003 (+)
G1546813 NA non-coding downstream 23347 39460369 ~ 39464012 (+)
G1546815 NA non-coding downstream 28824 39465846 ~ 39466414 (+)
G1546818 NA non-coding downstream 33025 39470047 ~ 39490769 (+)
G1546868 NA non-coding downstream 93506 39530528 ~ 39531137 (+)
G1546713 LOC106569985 other upstream 61336 39358411 ~ 39372481 (+)
G1546641 NA other upstream 287565 39133119 ~ 39146252 (+)
G1546605 LOC106588434 other upstream 313798 39116488 ~ 39120019 (+)
LOC110496176 LOC106588451 other upstream 742548 38677975 ~ 38696088 (+)
G1545533 LOC104965079 other upstream 757813 38675027 ~ 38676004 (+)
G1546817 LOC106588418 other downstream 30432 39467454 ~ 39469365 (+)
G1547334 LOC107666349 other downstream 324191 39761213 ~ 39761503 (+)
G1547652 LOC106588410 other downstream 598495 40035517 ~ 40040594 (+)
G1547743 NA other downstream 764887 40201909 ~ 40202458 (+)

Expression

G1546793 Expression in all Baseline Samples

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G1546793 Expression in each Bioproject

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G1546793 Expression in each Sample
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Co-expression Network