G1546815


Basic Information

Item Value
gene id G1546815
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 39465846 ~ 39466414 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1770011
gtaccttggtgtttatacttgaataCTGTTGtttgtggtaccttcaggtgtttggaaattgctccgaaggatgaaccagacttgtggaggtctacaatttgttttctgaggtcttggtttatttctttttattttcccatgatgtcaagcaaatgacatgtcatgcacgaagtagatgtcctaatcgacctgacaaaactatagtttgttaataagaaatttgtggagtggttgaaaaatcacgttttaatgactccaacctaagtgtatgtaaacttctgacttcaactgtatctcataACCTGTGACTTAAGGAGTCGGGTGAATTAAGAACTCCTTTacgtgaaatatattttcctgtTTGCCTCAATGCCTTGGCTATAGGCCTGACACCCTGTGGCACAGAGTAGCACTGTGGAGTGGCTGTACTCCACTGTTCGCTACTGATCCTGTGTTAGACTGGTGATGGCCAGGGGATGTTGAACTGTGAAAATCTATAAAATCTCTCAGTCCCAAATGAAAATATTTTTGCGCACAAAAACACAGACATATGCAAAAAAATACCAGAT

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1770011 True 569 lncRNA 0.39 1 39465846 39466414

Neighbor

gene id symbol gene type direction distance location
LOC110496201 LOC106588424 coding upstream 108722 39326837 ~ 39357124 (+)
LOC110496196 LOC106588428 coding upstream 235925 39221315 ~ 39229921 (+)
LOC110496194 LOC106588429 coding upstream 247638 39208209 ~ 39218208 (+)
LOC110496193 LOC106588432 coding upstream 262732 39195633 ~ 39203114 (+)
LOC110496191 LOC106588431 coding upstream 278218 39181006 ~ 39187628 (+)
LOC118940977 NA coding downstream 119456 39585870 ~ 39586862 (+)
LOC118941156 ssl-2 coding downstream 153305 39619719 ~ 39622185 (+)
LOC110496217 LOC106569969 coding downstream 598846 40065260 ~ 40077268 (+)
kifc1 LOC106588407 coding downstream 629414 40095828 ~ 40101459 (+)
LOC110496221 LOC106588406 coding downstream 637317 40103731 ~ 40110006 (+)
G1546813 NA non-coding upstream 1834 39460369 ~ 39464012 (+)
G1546808 NA non-coding upstream 11843 39453739 ~ 39454003 (+)
G1546793 NA non-coding upstream 28824 39433817 ~ 39437022 (+)
G1546774 LOC100136448 non-coding upstream 56693 39389340 ~ 39409153 (+)
G1546772 NA non-coding upstream 76841 39388689 ~ 39389005 (+)
G1546818 NA non-coding downstream 3633 39470047 ~ 39490769 (+)
G1546868 NA non-coding downstream 64114 39530528 ~ 39531137 (+)
G1547215 NA non-coding downstream 123647 39590061 ~ 39590273 (+)
G1547222 NA non-coding downstream 133147 39599561 ~ 39599837 (+)
G1547223 NA non-coding downstream 133623 39600037 ~ 39600322 (+)
G1546713 LOC106569985 other upstream 93365 39358411 ~ 39372481 (+)
G1546641 NA other upstream 319594 39133119 ~ 39146252 (+)
G1546605 LOC106588434 other upstream 345827 39116488 ~ 39120019 (+)
LOC110496176 LOC106588451 other upstream 774577 38677975 ~ 38696088 (+)
G1545533 LOC104965079 other upstream 789842 38675027 ~ 38676004 (+)
G1546817 LOC106588418 other downstream 1040 39467454 ~ 39469365 (+)
G1547334 LOC107666349 other downstream 294799 39761213 ~ 39761503 (+)
G1547652 LOC106588410 other downstream 569103 40035517 ~ 40040594 (+)
G1547743 NA other downstream 735495 40201909 ~ 40202458 (+)

Expression


Co-expression Network