G1547172


Basic Information

Item Value
gene id G1547172
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 39530483 ~ 39530887 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1770396
ATAGACTGAGTAAAGAGAAAGGCAGACATGTCAAGTGAAGTGGTAGACTGAGTAAAGAGAAAGGCAGGAGGGTGAAGTGGTAGACTGAGTAAAGAGAAAGGCAGGAGGGTGAAGTGGTAGACTGAGTAAAGAGAAAGGCAGGAGGGTGAAGTGAAGTGGTAGACTGAGTAAAGAGAAAGGCAGGAGGGGGAAGTGAAGTGGTAGACTGAGTAAAGAGAAAGGCAGGAGGGTGACGTGAAGACAAAAGAGAGCACACAGTCTGAAACCCCAAAGGGCCCGTTGTAGTCACCGCAAAAAGTCAAAGCGAGTGCAACAG
>TU1770397
ATAGACTGAGTAAAGAGAAAGGCAGACATGTCAAGTGAAGTGGTAGACTGAGTAAAGAGAAAGGCAGGAGGGTGAAGTGGTAGACTGAGTAAAGAGAAAGGCAGGAGGGTGAAGTGGTAGACTGAGTAAAGAGAAAGGCAGGAGGGTGAAGTGAAGTGGTAGACTGAGTAAAGAGAAAGGCAGGAGGGTGAAGTGAAGTGGTAGACTGAGTAAAGAGAAAGGCAGGAGGGGGAAGTGAAGTGGTAGACTGAGTAAAGAGAAAGGCAGGAGGGTGACGTGAAGACAAAAGAGAGCACACAGTCTGAAACCCCAAAGGGCCCGTTGTAGTCACCGCAAAAAGTCAAAGCGAGTGCAACAG
>TU1770398
ATAGACTGAGTAAAGAGAAAGGCAGACATGTCAAGTGAAGTGGTAGACTGAGTAAAGAGAAAGGCAGGAGGGTGAAGTGGTAGACTGAGTAAAGAGAAAGGCAGGAGGGTGAAGTGAAGTGGTAGACTGAGTAAAGAGAAAGGCAGGAGGGTGAAGTGGTAGACTGAGTAAAGAGAAAGGCAGGAGGGTGAAGTGAAGTGGTAGACTGAGTAAAGAGAAAGGCAGGAGGGGGAAGTGAAGTGGTAGACTGAGTAAAGAGAAAGGCAGGAGGGTGACGTGAAGACAAAAGAGAGCACACAGTCTGAAACCCCAAAGGGCCCGTTGTAGTCACCGCAAAAAGTCAAAGCGAGTGCAACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1770396 False 316 lncRNA 0.48 2 39530483 39530887
TU1770397 False 358 lncRNA 0.48 2 39530483 39530887
TU1770398 True 358 lncRNA 0.48 2 39530483 39530887

Neighbor

gene id symbol gene type direction distance location
LOC110496206 LOC106588419 coding downstream 78319 39433785 ~ 39452164 (-)
LOC110496205 LOC100136448 coding downstream 117017 39389215 ~ 39413466 (-)
LOC110496204 LOC106588420 coding downstream 146993 39376443 ~ 39383490 (-)
LOC110496202 LOC106569985 coding downstream 157978 39358398 ~ 39372505 (-)
LOC110496203 LOC106588426 coding downstream 203445 39308819 ~ 39327038 (-)
LOC110496207 LOC100136435 coding upstream 83783 39614670 ~ 39616840 (-)
LOC110496208 LOC106588417 coding upstream 94884 39625771 ~ 39641803 (-)
LOC110496816 LOC106588265 coding upstream 111954 39642841 ~ 39688750 (-)
LOC110496209 LOC106588416 coding upstream 166737 39697624 ~ 39723536 (-)
LOC110496210 LOC106588415 coding upstream 224652 39755539 ~ 39825088 (-)
G1547132 NA non-coding downstream 76299 39453904 ~ 39454184 (-)
G1547131 NA non-coding downstream 76966 39453288 ~ 39453517 (-)
G1547107 NA non-coding downstream 113678 39416550 ~ 39416805 (-)
G1547104 NA non-coding downstream 116050 39414173 ~ 39414433 (-)
G1547103 NA non-coding downstream 116352 39413925 ~ 39414131 (-)
LOC110496815 LOC106588418 non-coding upstream 29675 39467426 ~ 39566572 (-)
G1547195 NA non-coding upstream 35798 39566685 ~ 39566906 (-)
G1547201 NA non-coding upstream 38212 39569099 ~ 39569473 (-)
G1547440 NA non-coding upstream 60206 39591093 ~ 39591317 (-)
G1547441 NA non-coding upstream 61505 39592392 ~ 39592704 (-)
G1546396 LOC106588446 other downstream 742682 38776284 ~ 38787801 (-)
G1546385 LOC106588448 other downstream 756799 38768097 ~ 38773684 (-)
LOC110496175 LOC104924380 other downstream 854454 38674378 ~ 38676029 (-)
LOC110496167 LOC106588455 other downstream 967165 38557052 ~ 38563365 (-)
G1546053 NA other downstream 1316434 38165250 ~ 38214049 (-)
G1548367 NA other upstream 855083 40385970 ~ 40391883 (-)
G1548517 NA other upstream 1109288 40640175 ~ 40685641 (-)
LOC118941164 LOC106588367 other upstream 1374800 40902519 ~ 40908744 (-)

Expression


Co-expression Network