G1547454


Basic Information

Item Value
gene id G1547454
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 39609934 ~ 39611547 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1770705
catacttccacacaaatagtaggtatcctacgcacatacttccacacaaacagtaggtatcctacacacatacttccacacaaacagtaggtatcctacacacatacttccacacaaacagtaggtatcctacgtacatacttccacacaaacagtaggtatcctacgcacatacttccacacaaacagtaggtatcctacgtacatacttccacacaaacagtaggtatcctacgcacatacttccacac
>TU1770706
acatacttccacacaaacagtaggtatcctacacacattcttccacacaaacagtaggtatcctacgcacatacttccacataaacagtaggtatcctacacacatacttccacacaaacagtaggtatcctacacacatacttccacacaaacagtaggtatcctacgtacatacttccacacaaacagtaggtatcctacgcacatacttccacacaaacagtaggtatcctacgtacatacttccacacaaacagtaggtatcctacgcacatacttccacac
>TU1770708
acatacttccacacaaacagtaggtatcctacacacattcttccacacaaacagtaggtatcctacgcacatacttccacacaaacagtagatatcctacgcacatacttccacacaaacagtaggtatcctacgcacatacttccacacaaacagtaggtatcctacgcacatacttccacacaaacagtaggtatcctacacacatacttccacacaaacagtaggtatcctacacacatac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1770705 False 251 lncRNA 0.42 2 39609934 39610286
TU1770706 False 286 lncRNA 0.42 2 39609934 39611547
TU1770708 True 244 lncRNA 0.42 2 39610384 39611547

Neighbor

gene id symbol gene type direction distance location
LOC110496815 LOC106588418 coding downstream 43443 39467426 ~ 39566572 (-)
LOC110496206 LOC106588419 coding downstream 157770 39433785 ~ 39452164 (-)
LOC110496205 LOC100136448 coding downstream 196468 39389215 ~ 39413466 (-)
LOC110496204 LOC106588420 coding downstream 226444 39376443 ~ 39383490 (-)
LOC110496202 LOC106569985 coding downstream 237429 39358398 ~ 39372505 (-)
LOC110496207 LOC100136435 coding upstream 3123 39614670 ~ 39616840 (-)
LOC110496208 LOC106588417 coding upstream 14224 39625771 ~ 39641803 (-)
LOC110496816 LOC106588265 coding upstream 31294 39642841 ~ 39688750 (-)
LOC110496209 LOC106588416 coding upstream 86077 39697624 ~ 39723536 (-)
LOC110496210 LOC106588415 coding upstream 143992 39755539 ~ 39825088 (-)
G1547442 NA non-coding downstream 15187 39594308 ~ 39594747 (-)
G1547441 NA non-coding downstream 17230 39592392 ~ 39592704 (-)
G1547440 NA non-coding downstream 18617 39591093 ~ 39591317 (-)
G1547201 NA non-coding downstream 40461 39569099 ~ 39569473 (-)
G1547195 NA non-coding downstream 43028 39566685 ~ 39566906 (-)
G1547474 NA non-coding upstream 67057 39678604 ~ 39679129 (-)
G1547501 NA non-coding upstream 125244 39736791 ~ 39736990 (-)
G1547510 NA non-coding upstream 138772 39750319 ~ 39750552 (-)
G1547537 NA non-coding upstream 195472 39807019 ~ 39807225 (-)
G1547550 NA non-coding upstream 225974 39837521 ~ 39837785 (-)
G1546396 LOC106588446 other downstream 822133 38776284 ~ 38787801 (-)
G1546385 LOC106588448 other downstream 836250 38768097 ~ 38773684 (-)
LOC110496175 LOC104924380 other downstream 933905 38674378 ~ 38676029 (-)
LOC110496167 LOC106588455 other downstream 1046616 38557052 ~ 38563365 (-)
G1546053 NA other downstream 1395885 38165250 ~ 38214049 (-)
G1548367 NA other upstream 774423 40385970 ~ 40391883 (-)
G1548517 NA other upstream 1028628 40640175 ~ 40685641 (-)
LOC118941164 LOC106588367 other upstream 1294140 40902519 ~ 40908744 (-)

Expression


Co-expression Network