G1547253 (LOC106569976)


Basic Information

Item Value
gene id G1547253
gene name LOC106569976
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 39697634 ~ 39701800 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1770485
CCTGTTTTAATGAACCCTGATTACAATTTAATTACAAATAAGGGGTGAAAAATACAAGAGAAACAGAAGGTATGCTTCCTCAAGGCATGGAGTCTCATCTCTCAGTTTGAGTGTTAAATAACCGCTGAGAAGAGTGaacgaagagagagagggaggttagagggagagagatggtcaCCTTTCAAATAATACAATATCTTTTTCCTCACAGAGTCCTCCCAAAAgtgaaaaataatatatatacacaagaccaaaaaatatatttcaaaacgAAGGTAATGTGATAGGATTATGTGAGCCCCTCTTTTCCATGTGTCCACAATTACAAATACAACCAGCTTAGTTGAAGTTTTAACTACTATTTTAGTTCAGATAAGTGTAAGATGGAGGAGTTGTCATTGTTTGGAAAATACATactgaaaaataaaacacaactCATGAGAGATTCAAATAGCCATGGAAAAGAGGTAGGCCCAGGGTACAAAATAATCAAATAGTAAATcatgttaataataataataataataataataataataataataataataatgacagtaATAATATATTTTGAAAAATAAACAGCAATGATGATATTGAGGGAAAAGTATAGTAGGGAAAAAATGGTGATTTAATGTTTCTTTCTAAGCAACAATTAAGGCAGCTGTCAGTTACAATGCAAGGTGGGACAAAAGACTAGCTGGGTGGCTAAAGGCATCAGCATGCTTCTGTTTGACTGGTCCCGAACCGAATGACTGTGTTCGCAAAACTCCCTTAAAGACATtcgcttgaaaaacaagaaaaaaaagtgGCAATAGTAcggtttgtccattttgagatgccgtagccagtatacacttcctcaaagtAGTCAGAATAACTCAAGAAATATGTAATTAATTGAAGTTTTTGCAGAGAAGATCTTAGTCGCGCAATTTTAAACCTAACTAAGTGGGTGCAGTATTtctaaacaaaaaaaaatgtgcatgaaaatgaGTCGTCTCTCCTTGAATGACAActaagactttattgaagaatccatactgttgaccaatcaccgaagGGGCATAGACTTCAGCTACTGACGTCGGTTTCCTTCTAGAAAAAATATAATGTGCCCAAACAGCCGAAAAAACCTTACCGAAGTccaaaatgtaacaaaatgttagCATAATAAATCCACAAACTCTTCTGAACGGTTTCtgctgggaagcatgcggacgccttAAGGCAACACCAACAGCTGCTTAGACACCCACTCACGCCACACTAGCGCTATGAACAAACTCTGGGCAAGTCTTATTTTGGCCTGGATCTTGTTATGTTACCCAGCTGGAGGGGCATATACACAGTAGATGGCACCTGCAAAGCGTTTTCTCAGATTACGGGAAGTCCCTCTCCGAGGTTTTGTGATGTCATCTTCCTTTTACTCTAGGTTAGCCGCATTTACGCATTTCCACCCCTCTCAGCAGACCAGGTCTACCTCACATGTGTACACACAGGTGGTGGAGTGTTGCTGATGCATTCTCCTAGTATAGTTCATGGTCCAAGACAAAAGGCAGGTTCAGTAGACCTCTAGTCCCTGTGTTCCCAGGAGCATTTGGGATGTCGAGAAGGGGTGAGCCTGGTCGTAAAAGCTGAGGTTCAGGGTCCAAGATCTAACATTTCTCCATTATTTGTTCATTTACTGTCCCTTTACACTCACCATCCTTCAACCCCTAAACAGAATACTTGTTTTTATAGTACAAACAGAACCGTGTTCCGATTCCTCTTGCACAAGGACCCTTTTCAATGCAGTTCCACAGTCAAGAGGGGCAAGGAGATGCCCAACATATAGTTACCATTACAATTCCTGATTCATAATCAAATTATACGTTTTTTGGAAATATAACATTTGTATTTAATATATTCAAATAAAATGTGTAGTATTGGTTTAAGTTATTCAGCATCTGTTTCTTAAATGGTATAAAACAAATAAGGCAAAGTGGCAATCAGTGTATGCGGTCTGTTCCCACGCCACACCAACTCATTTCAGTACGGTATGCTCTTGAGGCTTctacagaagtgtgtgtgtgtgtgtgtgtttgtggggagGTACCATGTGAGTTAacaatgagatttttttttttttacacgagTGTGAACGCCAGGGAACaacattgtgtctgtgtgtgggagagtgtgagCACATTATTTGGCAGGGGTAATTCCTTTAAGTCACCTGTCAGTTTAAAAAAAAGGCACAATCTCAATTTGTCCGGTTTGTTCATTAAAACGGGCAAAGTTCAAATGTCACTAAAAAGGCTTTGTGAAGTTGCCTGATATCACCTCGGTACTCGCATTCATGGTATACTTTCTTGGGGCGGGAGGGGAAAATCTATTAATTTCAGTCTCGGTTCAAGAACATTGTATATACAGAGGTACTTCTAACCCTCCGTTCACTGCAAATGCCCCACCGCATCTCCCCAAATACGgtcctttttttttgttttttgaggCACCCTCTATGGGAGAAACAGGAGCGGCTTAAACGAGGGGAAAGGAGACCTTTAAGATAATATTTCAACAACATTTCAAGCGCGGACTAACTACCCATTTCCTCGATCCGCTCTTCTTAGAAGATTGTGCAAAAGTCTTGTAGGGTCCCCAAAAGCTGTCCATTAAGGCCTGGTTGGGTTGGGTACTGCATTGTTGCCATGGTAGGTGTCAATCAACACTTGAGTGACAGGAAGGCCATAAGAGACAAGGGGGGGGGGTCTCCAGTCAGTCCGTCCACGTCCTCTATAGATCTGCACGCCATTATGGTTTTTGTCCCTATGCTCAAGTCTGGGGAGAGACGATTATCAAAGAGCGTCTGGTGAAAAGGAGGGCTCACTCAGACAAATTCAGTCTTAAGTCTGTCCCTGTCGAAGAGGTCTGACATACGCGGACAAGGAGGTCTCTGTTTTGAATCCTGAGATCCCTTCCCAGTCATAAAAGGTGATGGAACAGTTGACAAGAGTTGGTAGGCGGTCCCCGTCAAGACAAGCACTTCTGTAATCTCTTTTCAAGTCTGTTGAAGGTAGAAGGCATTGTCGtgatgtcacccccccccccagtgtcaGCAATATTAAGGTTCTTCTGGGAGAGTGGGTCTGAAGGGACTCTTTCCCATCTGTTTTGATGCAACATAAAAGGCTAAGGAGCTAAGGGCGTTACTGGGAGGAGATGTTGAGGGGAGATGGAGGCACCTTAAGGCAGCGTACAGGTCTAAGGGATGGATCCTGGAACTAGGCCCGTTTAGAGGGGATATCTAATGGCCAGCCTTAGTTTCTCAGTCACAGCATGTTGAGCTGTGTGTTAATGTTCACTATTAAATCAGTTCAAAATGAGAGTAAAAAAAGCCTTCCGCACAGGCACTTGTGTATATGCGTAAGCTTGGTTATATGAGCGAGTGTGTATGTAGGTATGGGCATGagatcgtctctctctctctgtgtgtgtgtgtgtatccctgcCTCAACATGCTCCGTGGTTCTCCAGAGACAGCTGGGCTGTGGCTCTCTGCAGCTCGGAGCTGGCCCTGCGCTGGGCCGGAGGAGCCCCCAGACTCATGGACGGGCTTCTCCTTGGCCCCTCCCCATTCTCTGACTCCCTCCTTGCCggctcctccaccacctccttctCCGCCCGCACTTTCTTATCCTCGGCCTCCTCGCGCTCGCCATAGGCCTCCATCTTCTGGTCCTCGCTCCAGCGGCGTTTGAAGCGCAGCTTGAGGGGGATACAGAGGGTGCCGCCGGGGCTGATGGGAGGTCCCTGGCCTGGCTCGCTCTTGAGGCCCAGCAGGGAGGGAGTCAGAGGGCCCATGGGAGGGGCGGCGGGGGTCTTGAACACATCCTCATCCAGGTCGTCAGCGGCGATGGCACCCAGGTTGGTAATGGCGGTAGGGGCGGTTCCGTTGGTGGGATGAGGGGGGGTGAAGACGTCGCCCTCGTAGTCGTCGAGCAGCTCGTCCTCCTCGCTGATGTCGGTCACCTCCACTTCCTCATCGGACTCAATGTCAGAGACGG

Function

NR:

description
ETS domain-containing transcription factor ERF-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1770485 True 4052 lncRNA 0.45 3 39697634 39701800
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118941156 ssl-2 coding upstream 75449 39619719 ~ 39622185 (+)
LOC118940977 NA coding upstream 110772 39585870 ~ 39586862 (+)
LOC110496201 LOC106588424 coding upstream 340510 39326837 ~ 39357124 (+)
LOC110496196 LOC106588428 coding upstream 467713 39221315 ~ 39229921 (+)
LOC110496194 LOC106588429 coding upstream 479426 39208209 ~ 39218208 (+)
LOC110496217 LOC106569969 coding downstream 363460 40065260 ~ 40077268 (+)
kifc1 LOC106588407 coding downstream 394028 40095828 ~ 40101459 (+)
LOC110496221 LOC106588406 coding downstream 401931 40103731 ~ 40110006 (+)
LOC110496223 NA coding downstream 427660 40129460 ~ 40142425 (+)
LOC110496224 NA coding downstream 462341 40164141 ~ 40199663 (+)
G1547223 NA non-coding upstream 97312 39600037 ~ 39600322 (+)
G1547222 NA non-coding upstream 97797 39599561 ~ 39599837 (+)
G1547215 NA non-coding upstream 107361 39590061 ~ 39590273 (+)
G1546868 NA non-coding upstream 166497 39530528 ~ 39531137 (+)
G1546818 NA non-coding upstream 206865 39470047 ~ 39490769 (+)
G1547327 NA non-coding downstream 47788 39749588 ~ 39750020 (+)
G1547329 NA non-coding downstream 49910 39751710 ~ 39752942 (+)
G1547330 NA non-coding downstream 54400 39756200 ~ 39756869 (+)
G1547333 NA non-coding downstream 58252 39760052 ~ 39760449 (+)
G1547337 NA non-coding downstream 62270 39764070 ~ 39764299 (+)
G1546817 LOC106588418 other upstream 228269 39467454 ~ 39469365 (+)
G1546713 LOC106569985 other upstream 325153 39358411 ~ 39372481 (+)
G1546641 NA other upstream 551382 39133119 ~ 39146252 (+)
G1546605 LOC106588434 other upstream 577615 39116488 ~ 39120019 (+)
LOC110496176 LOC106588451 other upstream 1006365 38677975 ~ 38696088 (+)
G1547334 LOC107666349 other downstream 59413 39761213 ~ 39761503 (+)
G1547652 LOC106588410 other downstream 333717 40035517 ~ 40040594 (+)
G1547743 NA other downstream 500109 40201909 ~ 40202458 (+)
G1547788 NA other downstream 624675 40326475 ~ 40327181 (+)

Expression

G1547253(LOC106569976) Expression in all Baseline Samples

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G1547253(LOC106569976) Expression in each Bioproject

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G1547253(LOC106569976) Expression in each Sample
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Co-expression Network