G1547337


Basic Information

Item Value
gene id G1547337
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 39764070 ~ 39764299 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1770569
GTTCCCAATGATTaccgttgtctctaattggggatcatacttaagttgtCCTTTGttcccacctgttttgtgggatattgttttgtgtgtgtgcatgttgcaCCACAAGGGGCAGTCGGCTGAGCAgcggagagtgccagagcccgtCTGGGAGTCGGTGGAGGAGTTTAATGAGGGATCCCGGAGAGAGGTGTTGGCGAGGAGTATGCTGCAGCGCAGGCATGCTGAAg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1770569 True 230 lncRNA 0.53 1 39764070 39764299

Neighbor

gene id symbol gene type direction distance location
LOC118941156 ssl-2 coding upstream 141885 39619719 ~ 39622185 (+)
LOC118940977 NA coding upstream 177208 39585870 ~ 39586862 (+)
LOC110496201 LOC106588424 coding upstream 406946 39326837 ~ 39357124 (+)
LOC110496196 LOC106588428 coding upstream 534149 39221315 ~ 39229921 (+)
LOC110496194 LOC106588429 coding upstream 545862 39208209 ~ 39218208 (+)
LOC110496217 LOC106569969 coding downstream 300961 40065260 ~ 40077268 (+)
kifc1 LOC106588407 coding downstream 331529 40095828 ~ 40101459 (+)
LOC110496221 LOC106588406 coding downstream 339432 40103731 ~ 40110006 (+)
LOC110496223 NA coding downstream 365161 40129460 ~ 40142425 (+)
LOC110496224 NA coding downstream 399842 40164141 ~ 40199663 (+)
G1547333 NA non-coding upstream 3621 39760052 ~ 39760449 (+)
G1547330 NA non-coding upstream 7201 39756200 ~ 39756869 (+)
G1547329 NA non-coding upstream 11128 39751710 ~ 39752942 (+)
G1547327 NA non-coding upstream 14050 39749588 ~ 39750020 (+)
G1547253 LOC106569976 non-coding upstream 62270 39697634 ~ 39701800 (+)
G1547367 NA non-coding downstream 50016 39814315 ~ 39814675 (+)
G1547381 NA non-coding downstream 69729 39834028 ~ 39834271 (+)
G1547382 NA non-coding downstream 70170 39834469 ~ 39835365 (+)
G1547384 NA non-coding downstream 73150 39837449 ~ 39837773 (+)
G1547400 NA non-coding downstream 104558 39868857 ~ 39871465 (+)
G1547334 LOC107666349 other upstream 2567 39761213 ~ 39761503 (+)
G1546817 LOC106588418 other upstream 294705 39467454 ~ 39469365 (+)
G1546713 LOC106569985 other upstream 391589 39358411 ~ 39372481 (+)
G1546641 NA other upstream 617818 39133119 ~ 39146252 (+)
G1546605 LOC106588434 other upstream 644051 39116488 ~ 39120019 (+)
G1547652 LOC106588410 other downstream 271218 40035517 ~ 40040594 (+)
G1547743 NA other downstream 437610 40201909 ~ 40202458 (+)
G1547788 NA other downstream 562176 40326475 ~ 40327181 (+)
G1547817 NA other downstream 662809 40427108 ~ 40429520 (+)

Expression


Co-expression Network