G1547652 (LOC106588410)


Basic Information

Item Value
gene id G1547652
gene name LOC106588410
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40035517 ~ 40040594 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1770924
TTCTGTGCATGATGCCAAAAGTATAACATTTTCGAAACGGTTAATTCTAGCACACAAGGGCATAGTTGTTCGTACGTGATAGCGAAGTATTATAAAAGTCAAcgataatatagctagagagccAACAGTATGAATTCTGGACTTAAACCTAACAGGCAAGTTTGGGAAGTAATTCATTTGaaatgaaacaaaacaataaaatgcAATCATAATAGCCAAGGTTAGCACGCATCATTTCATTTTCAGAAGCAGTTTTCCTGATTACATCTGACATCTTTTCCCACCAAGGTACCTGAAATAAACCTGCCAGGTATACCATTCAGCTGAATTCAGCTATGGACTTCGGCCTTGTGAACTCAACCCTGAGGTGGATCAAATGGACATAGATTGCTGAATACTAAATACTACTAATAATGAATTACTTTGTAATGAATGGTCATACTTTGTTGCCGAAATCCCACGTTTTCTACCGGTACATAGCATAAAGTCACTCCAGACTTACTCTCAACTCTGGTTGACCGTTTGTTTTACATACCATGTTGGCTGACATCAATATTAAGGAAATAGAATCATTGTGAAAATTGCAGAGGTGATTTTGTAATGGCTTTTGCGGGCGACGTGTACATTATTCCAGTCTGAGCCATAGTAATATTGACAATGAGAATACCTCTTTGACTGCATGAACAGACACCAACAAGATAGTATTTAAGTTGCATTTTAAATATGGCAATATTCCTGCTGTCTCACAGGCAACCTACGGCTCAACATGCAGCAGTAGTTTTTGGGTACACTATAGCTGACAGCAGTTATCTGCATAAGAAGAAAAAAGTGTAGTATTAGTTAAAGTAGTCGTGATACTAAGAGTTCTTATGAAATGTTCAAGCATGTCTAGCATTTTCCCAAAAAACATTCTGAGGTTCGGATACTATCGTGTGATACTCTAGGTAGATGATGTGTGATgcaaaagagagaagagaacgagagacagaaaAATAGGCATTTTACTGCTATTATGTCTCCTCGATCACTCAGTCTAAAGGCATCTCCTACATTACGTGTATCAGTATAACTACTGTGAACTTAGTGAAAGGATAAATTACCCAACTCAGGGATATAAAATCTTGCATAACTTTGCAGTAAGAAACAGTATTGGCTATACACATGCAATATATCTCGGCTATATACAAGAGTGCTTGAAAGTGAGCTTTGGGTAAGATTTGTAAGGTAAGATTTTTACATATATATATCTTTGTTTTTCAGTGCTAACGCGCAGATATTGCTCAAGATTCAATTAAAAAGCAATCCCCCTTTAATTAGTTAAAATAGGAATGGGTCAAATATACCTCATCAGACTATGGATTCAGTAGCTTGTTACCTGATATGAAAGGGATAGCTTTAAAGGTGGCTTTTACATTGTCTTTAGTCAAAGTTGTCATCAATTCTAAATAATTAGTGCAAATGAAACACCAATTGAACACAAATCTATAAATAAATGATATTCTACAAAACCAATATAATAGCCGATAGAATAGCAACGATCAAGTAGCTACATCATATATGATGAATTTACACGTAAGACATTTATTTACGCTGTCCGGCATTCTCATGTTGCATTAAAAACGATTTAACCTTCATTTTCAACCAAAAAAAGGAATGTAGAATCATACTTTTTATTTTGTCGGTAGTGTTATTTACAACAGCTGCAATTCAATTCATTTTGAACATTTTTGTTATACTTTTAACGGTTTCTCATGTTATATTTGTGCTTTTTCTTTCAGACACCAATCATGTCTGCCTTACTCAGTTGAGTTCCACTCACGGACATCCTAAATCGGTCACAACACGAGGTAGCGATATTGCTAGCAGACGCTGTCCCCCAACAAATTCCTGGGACTGTTACACCCCTTCATTCCCTTTGTTTTGACCTTTTTAACATGATCATGTGTACACACACCAATTATCGACATACAGAATGCCCTCGTTAATAATATGCCGAACCTGATTGGACTAGAGTTGAAACCAATGGGAATCCTTAGTGGAATGGTTTGTCAGATGTTGTAATGTGTGTATTAATATAGTGTTACTGAAGAAAATGGATGGTGGATGACTTTGCAATATATATTTGCAGCAAATGGACAAACGGACATCTCTCACTGATGTTATCTGAACGGTTGGCGAACGGTTTCTGCGTTTTTCCTGTTCAGACTGAATATGTTGAATAGATCCAGGATATTAGGCCTATTTTACAGTACAATTCTCATAGGACTTAAGACAATACAATAATCTTGAAATTTCAACAGTTCAGCAACCACGATGTTGGATTAAGAATCATGTTCTGTTTCTTATAATCTAGTCGTGCATCCTCACCCATCTGAAATACAATGTGTTTGAAAAAATGTTGTACTGAATTGAGATGAATTAGCGACTGTTAGTCGTTTAGAGATTCTGGGTGGGATGTTTGGTTCAAATAAATGAATCTGACAGTACATAATGTGTTGAAAGGAAATGTGCAAACCTTCTCCCATAAAGACTTTGATAAATGCAGCGGCAAGGGCATTGAATTGTAATAACTTTTCTGGCTTTGTTGGCGCGCCAATCTCAGTAAGCGATGTGTTTTCAGTCTGTCAGGAAAGTTGGCTTAATCGCTAGCATTTATCAATTTAGCACTCATTTTGGGCCGTGGAGTCAGGCAAAATAGGAATGAAAAAAGGGGgcttcccgagtggtgcagtggtctaaggtactgcatcgcagtgctagctttGCCACTAGatattctgggtttgagtccaggctctgtcgcagccggccggagacccatggggcagcacacaattggcccagcatcgtccgagttaggggagggtttggcgggcagggatgtccttgtcccatcgcgctctagcaactcctgtggcgggccgggcgcagtgctcTCTGACAcgatcgccaggtgtacggtgtttcctccaacacattggtgtggctggcttatgggttaagtgggcattgtgtcaagaagcagtgctgttgggttgtgtttcggaggacgtgctctcgaccttcgcctctcccaagtccatatgggagttgcagcgatgagacaagacggtaactaccaattggatacaaaAATAAGGAAGGGTGACATCATGCAGGTCATTCATTGTCAATAGGTCTGCCTCATCATCTTATCACTCCCGAGTCTGTCTTTATTAAAGGGCAACAATCCAAATGTTTAGGTCCCTTCCAACCAGAAGTCCCTGTTCCAAGGCTTTTTCTGCAGTGGCTGGGGTTGTAATGAGAAACATGCCCTTATGTAGATGGGTTCAAAATGGAGTGATGTGAAGTTGCCGTTGTATTAGTTCCGGGTCATTTGTGTTGCAAGCTAAGGGATGTTTAAAACATGTGTTTTACTGGATGATGTCATCAAAAGTGGCAGAGATTTGGAAACGTTGTTACATGCCCAGGGACACTACAAGCTTTCTTGCATAGCATGGTGTTATTCAATCTACGAGGCTTGTATCAGTTATCAAGAATTAGCTCTCTATAGAGGCTATATGCTGAGACAAGCGCTTTCTCTGAGTTGGTGCCAAAGCCTTGCCTGTAATTTCTGTCATGTAATGAAATTGTAGCGGTATAGGCCTAAGTCAGAAACTATGGGCTTGTGGTTGTCAGAAGTGTTATTTACCAATATTTTTTTAGAAAATAAAGTTGTCTTTATTGGTTTTGTTAGTCTAGtattacaattttatttgtaaaattaaGTTGGTCTATTACCCTGGGCCTATGTCATACATTTTGCTGCTATGTCTATGGCCCCACATACATAGTATCAGTGGTAGGGACATTCAATGCTAATAAGAAAGATGGATTAAATATGTTGTAGATCTGTCATTTTTGTCATTATAGGAAATCTGGGATACATTTTTACAggattatttaaaacattttttactttGATATCAGTGTGCACTCGTTCCTTTTGGACATTTTAATCTTGCATTTTCCCTTAGTCCACCAAGTTATCTTAGATATTATCTCTGAGTCTGTGGTTCTTAATACTTAGTACTATCAGTAATTAATACTATCAATTCCCTCTTGGGCCAGCTAAGGATACATTCTAGCTTTAAGTCTAATTTAAAAACATGTGTAACGGGGGTCACTGCCACATACTGGGCTCGAACTAGTGATCCTCTGCTTCACAACACACGTGACCGCCCTCCTTGACAACATTCCAACGGGTTGATCCACCCAGAAGGTGCCAAGTGGATGGCTCCATCCGCGACATTTCAACCTAGCTCTTAACACCGTTACACATGCATTTCCTGTATGCACAGAATTAATGTTTTCTAATGAGCTAAGTTCTTGTATTTTTCCTCTTTAGAAAGTCTAGCGCATTTAGACTGGCTATTTTTACACCAAGTAATTTTTTGTAGCtttaggttaaaaaaaaagaagcagtGATCGGGATTTGGGtcgtgtctgtgtgagtgggggAGTAATTGAGGCTGAAGAGTAAAGATTGTTAGGGTGTCCGGTGGTTTGTGTCTGACTTTTAGGAATACAATGCAGGTGCTCTCAGGTGATGGTGTTCTCTGCGGTGGCACTGGGAATCAATGGGCTGCTTGCTTAATCGCCAGGCTCAGCAACACTGTCGGCTGCCTTAAGTCCTCCAGCCAGCTCGGCGCCCCTGGATGTCATTTCTGGCGTGCTGTCACCCATCAGGTCTTCTTCAGGGGCGTCGGCCTCAGAGCGGGCCTGGGTCACAAGGCTGGGGCTCATGGCCGAGTCGGGGTTCCGGTTGGCGCTTTGATCTCCCTCTGGGATGACAGTGGCTGCCACGCTGTCAGAGTTGTTGAGGAGCAGCTTGTGGGAGGTGAAGGTCTGGGGCACGTCCGTCTCGTATTCGCTGTCCAACGGGAGGCCGGAGGAGTTGAACTCTACCCCCGAGTCGCTCATCTCCAGGAAGTTCTTGTCCGAGGAGAGAGTGTGGTAGCGGCCTGCTTTAGATACCTCCA

Function

NR:

description
unknown protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1770924 True 5021 TUCP 0.41 3 40035517 40040594

Neighbor

gene id symbol gene type direction distance location
LOC118941156 ssl-2 coding upstream 413332 39619719 ~ 39622185 (+)
LOC118940977 NA coding upstream 448655 39585870 ~ 39586862 (+)
LOC110496201 LOC106588424 coding upstream 678393 39326837 ~ 39357124 (+)
LOC110496196 LOC106588428 coding upstream 805596 39221315 ~ 39229921 (+)
LOC110496194 LOC106588429 coding upstream 817309 39208209 ~ 39218208 (+)
LOC110496217 LOC106569969 coding downstream 24666 40065260 ~ 40077268 (+)
kifc1 LOC106588407 coding downstream 55234 40095828 ~ 40101459 (+)
LOC110496221 LOC106588406 coding downstream 63137 40103731 ~ 40110006 (+)
LOC110496223 NA coding downstream 88866 40129460 ~ 40142425 (+)
LOC110496224 NA coding downstream 123547 40164141 ~ 40199663 (+)
G1547588 NA non-coding upstream 128762 39903628 ~ 39906755 (+)
G1547587 NA non-coding upstream 129261 39903222 ~ 39906256 (+)
G1547400 NA non-coding upstream 164052 39868857 ~ 39871465 (+)
G1547384 NA non-coding upstream 197744 39837449 ~ 39837773 (+)
G1547382 NA non-coding upstream 200152 39834469 ~ 39835365 (+)
G1547682 NA non-coding downstream 13603 40054197 ~ 40054426 (+)
G1547711 LOC107394864 non-coding downstream 45363 40085957 ~ 40088021 (+)
G1547743 NA non-coding downstream 161315 40201909 ~ 40202458 (+)
G1547334 LOC107666349 other upstream 274014 39761213 ~ 39761503 (+)
G1546817 LOC106588418 other upstream 566152 39467454 ~ 39469365 (+)
G1546713 LOC106569985 other upstream 663036 39358411 ~ 39372481 (+)
G1546641 NA other upstream 889265 39133119 ~ 39146252 (+)
G1546605 LOC106588434 other upstream 915498 39116488 ~ 39120019 (+)
G1547788 NA other downstream 285881 40326475 ~ 40327181 (+)
G1547817 NA other downstream 386514 40427108 ~ 40429520 (+)
G1547834 rps18 other downstream 429775 40469109 ~ 40471582 (+)

Expression


Co-expression Network