G1548317


Basic Information

Item Value
gene id G1548317
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40154838 ~ 40169209 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1771691
AATGACTGACAAATTAAACCTACACAAGTATCTCAAAGAGAAATCACATTGAGATCTGACATTCACCAACCTGCCACTCAGGTGATTGGAGAGTGACCTTACCAATGCCATACAAGCATAAAGATGGCATGCTTATAGTTCGATGCCATTTACAGTAGTGGTATGGTCATTGTCCTCTGTACCTCACACACTTAAAACAGTACACAGTAGTAATAAAATGAATGCTGTGCTGGTGTCCAGGAGAAAGAATTGggaccatacatacagtaaaCATAAACAGAGAAACAAAGGAGACCATGCTAGATGCTTTGAAATACTGATATCAGCAAATGATGCTGTGTGGTAAGTGTGTGGAGAAAACAGAAACAGGACGGGAGGAGCGGATCTGTACATCCCTGATATTCTAGATCTGTAACTTTAGCGATCACTTCTCTAATCCTGTGTAATTCTTGTCTCCTAGAATAAGGAAGTGCCCGTTTTGATAGTTTATAAGCACAAACACAAGCGCAACTGATCAGATGAAGTAAAGATGAAGGATTTACCTCCACTTTGGTTAAAACGCTGCTTTACAATATCGATGCTGGCTTTGTAAGTCTGCTGGGTACCCTTGAGAATCCCTGTCTGACTCTCCCAGTACTGTGGCAGTGTTTCTGCTGCCTTGTTCATCCAGTCCTGTCTGGGCACCATTCTTTGGCTGTTGCTGTCATAGTGAACCATCTGaacaccatccaccatccccacaACCACGAACTCTGGGAAGTTGGGAACTTCAGAAGATGCGGTGTAGAAATACTTCAGGGAGTGAGTCAGCAGATGCTGTATGAAGAAGGCCTATTCCCAGCACCAGCAAGATAATACCCTTCATGTTGACGAAGTATGTTATCTCCAATAGGTATTATATTCAGATTCTCTCTAACTGCGTTACCCACTTCAGTAGCCTATTCCCA

Function

NR:

description
MHC class I heavy chain, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1771691 True 947 lncRNA 0.43 3 40154838 40169209

Neighbor

gene id symbol gene type direction distance location
tapbp.1 LOC100136299 coding downstream 24643 40125565 ~ 40130195 (-)
LOC110496222 LOC106588403 coding downstream 31967 40111013 ~ 40122871 (-)
LOC110496218 LOC106588408 coding downstream 61066 40080215 ~ 40093772 (-)
LOC110496219 NA coding downstream 67048 40087244 ~ 40087790 (-)
LOC110496215 tbb5 coding downstream 91289 40056394 ~ 40063549 (-)
trnaa-ugc-138 NA coding upstream 17933 40187142 ~ 40187215 (-)
LOC118941158 LOC106588400 coding upstream 39255 40208464 ~ 40209202 (-)
LOC110496227 LOC106569958 coding upstream 41075 40210284 ~ 40213780 (-)
LOC110496231 LOC106569953 coding upstream 149836 40319045 ~ 40369178 (-)
LOC101268904 LOC106588394 coding upstream 223411 40392620 ~ 40416084 (-)
G1548270 NA non-coding downstream 101237 40053375 ~ 40053601 (-)
LOC110496213 LOC106588411 non-coding downstream 124335 40029650 ~ 40034564 (-)
G1548260 NA non-coding downstream 129396 40025236 ~ 40025442 (-)
G1548257 NA non-coding downstream 132840 40021788 ~ 40021998 (-)
G1547609 NA non-coding downstream 229845 39924639 ~ 39924993 (-)
G1548323 NA non-coding upstream 1650 40170859 ~ 40182138 (-)
G1548324 NA non-coding upstream 2280 40171489 ~ 40172837 (-)
G1548331 NA non-coding upstream 37430 40206639 ~ 40207042 (-)
G1548376 NA non-coding upstream 65911 40235120 ~ 40239085 (-)
G1548377 NA non-coding upstream 70343 40239552 ~ 40239752 (-)
LOC110496816 LOC106588265 other downstream 466157 39642841 ~ 39688750 (-)
LOC110496208 LOC106588417 other downstream 523740 39625771 ~ 39641803 (-)
G1546396 LOC106588446 other downstream 1367037 38776284 ~ 38787801 (-)
G1546385 LOC106588448 other downstream 1381154 38768097 ~ 38773684 (-)
LOC110496175 LOC104924380 other downstream 1478809 38674378 ~ 38676029 (-)
G1548367 NA other upstream 216761 40385970 ~ 40391883 (-)
G1548517 NA other upstream 470966 40640175 ~ 40685641 (-)
LOC118941164 LOC106588367 other upstream 736478 40902519 ~ 40908744 (-)
LOC110496277 LOC106588347 other upstream 1494227 41663436 ~ 41671516 (-)
G1550177 LOC106569881 other upstream 2146077 42315286 ~ 42316079 (-)

Expression


Co-expression Network