G1548376


Basic Information

Item Value
gene id G1548376
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40235120 ~ 40239085 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1771755
TTAggataggttttaatagtcacagtgggtacaacatctcctatagcCTTCCTGATAACCTCAGTCACCGTATTAGtatatttgtttatgtttttcTCTGAGGCCACCCGGAACATAtaccagtccgcgtgatcaaaacaatcttgaagcgtggattctgattggtcagaccagcgttgaattgtccttagcacgggtacttcctgtttgagtttctgcttgTAGGAAGGGGGGAGCAAAATCGAGTGTGATCAGATTTGCAGAAGGGAGCACGGGAGAGGGTCTTGTAGGCATCgcggaagttggagtagcagtggtcgagtatTTTAGCAGCGCGTGTACtatagtcaatgtgttgataaaaATTTGGTAACGTTTTCCTCtattttgctttgttaaaatcgcCAGCTACAAGAAATTCTGCCTCagcatatgtggtttccagtttgcataaagtccagtgaaatTCTTTGAGGGCCATCGTGGCATCGGGTATATACACGGCtatgactataaccgaagagaattctcttggaaggtaattcggtcggcatttgattatgaggtattctaggtcTGGTGAACTTTTGTtcacttgagttcctgtatgttatcacaatcacaccatgagtagatAATCATGGAACACACCCCTGtccttcttcccggagagatatttatttCTGTCTGctcgatgaactgagaacccaactggctgaaCAGACTCAGACAGTGTATCCGAGTaacaaacatttctgggatcttttatttcagcccctgaaacatgggaccaacactttacatgctgtgtttatatttttcttcagtgtatAATGACCATTTGCAGTGCTTGAATTACAGCAACTGGTAACCAGTTATGGATGCTTTATCTAAATAGTGAGAAaagagtgtagtagtagtgggggCCACCTCTGGCTTCTGGAGGTCTCAAAAAGTTCCATCATGTTTGATGACACACAGGTCCACGTTACTTCCAGAGCCCAGGTCGTTCATGATGCCAGCTGGTTCATGATGCCAGATGTTATGGCTTCCCGCACAAACTGCTTGGCCTCCTCCTCCTAACAAAATAAACACAGGCACAAAAGGAGTTAGTTGGCCTACATTTGCACTATTAATGTTATTCTCCCGTGAATAGATATAGGTAAAGTTACATTCATATTAGGTTTATAACGATCTTCGAAAACAACCAATACTGCAAGGTCACCAGATCCTGAACTGGAAAAAAATCATACTAACCATACGAACATATCCAGACATGTTCTTTTATCTTTCATCTTCCAAGATGTCCTCACTCTTTCCTCTACAATTGTCTTCATTCAAACTCAGACACAGGGAGCGCAGAGGAGGAGGGAATTATGTTTACATACTACATTATGAAAAACACAATACCATCTTTGTGTATCTAACAACTCCTCAATGTCACAGGGAAAGCATACAAATTGATAAAAAAATAGTGAAGATTAATACAAACCCATGGTGGTGAATGGGGCCTTGTTGACTGAGCCAAAGGGGCCCACTGTGAAGATATGTGGGCTAGTGCAGTCTACCCCACCAAAAGCAGCATGGCACTGTTCTGACCGCTGTGCCGGCACTCCAAAATAGACTGACATGGTTAAAAAGCCTAATAGATAAATTGTTTTCACTGTCCTGTTATTTTAGTGAATGGTAGACAAGGAACTGTGTATCACAGTATATTTTGAACCCAAATACAACATTTTCAACAGCAGCCAGAGGCGTACACTTCTGTAAATGGAAGCTGACTCAAATCAATTAACACTGCATAACAATAACACCCACTGGTGCGTTCAGAGGTCCATTTTGTCCCTTCGCTAATAAGATCAACCTCTGTCAGACAAAACATTATTATGTAGACTAGAAGGTCACCTGAAAGTAAAGTCCCGTAACATGCAGCATCTGTTGATTGCAGAGCCGGATTTGAGTGCGGCATACTGTATCAATTGTCTATACCAGCTGCAGTGCCAGTTTCACAGGTCAGTGTGCTGCTAACAGTTACCCTCCCCGCTGTCTAACTGCTGGCTTGAACCAAGGTTCTGCGTCGCAGCACACGTGGCCACCCTGCTTGACAACGTTACCAACTGATTGAGCCACTTAAGATGTCCTTCTTGAGTGGCCCCAGCCGAGACATTTGAAGCGTGCTGTAGAGTGAGCTTTTTTCCCCCTCTGTTACACGAGCTCCACAGCATCTGTGGGAGAGGGAACCTCTCTCTATGTTTCAGGGACACCAACGGTCACAAACCAACACAACAGAGCAAGACAGGTTCTAAGCTTGTCTTAATTAGGTTCAATCATATACACTGCTGATTTGAAGGTAGGACAGTGATGTATTTCAGTGTGGACTGATGGTAGTCGCAGTCTTCAGCCTCTAGTTTTTGCCAACTGAATTGTCTTGAAACGTTTGTGCAAGGGGACTTACGCATGTTGCATGTGTATGCATGGCATGCACCTCCTGTATGTGAGAGAGTATTTCCCTctttgttccctccctccctctctccctgctccctccctcattGTTGGTACTGATATAGTCAGTTGGTACGTGGATTGTTGTCGATAAGTCACCAAACTTATGGGACAGGCGAGGGGACAACACTGTATCTCTAACTGACAATGCAAACttgagaaaatatatattttagatatatattacataaagaatatacttaacaaaaatataaacgcaacatgtaaagtgttggtcccatgtttcatgagctgaaataaaagatcccagaaatgttccatatgcacaaaaagcttatttctctcaagttTTGTACacattagtttacatccctgttagtgagcatttctcatttgccaagataatacatccacctgacaggtgtggcatatcaagaagctgattaaacagcatgattctTACACATGAGCAagttgtgctggggacaataaaaggccactttaaaaagtgcagttttgtcacacaacacaatgccacagatgtctcaagttttgagggagcatgcaaaactgagtagtatttctgtctgtaataaagcccttctgATTGGCAGGGCCTGCCTCCCAAATGGGTGGGCATGGCTGCACCtctgctcagtcatgtgaaatccatagtttagggcctaatttatttatttctattgactgatttccttataagaacagtaactcagtaaaatcgttgaaattgatGAATGTGGCTACATCACAGTTATCTCACGAATGTCATGTATCTCATGATTGTTACACTTCCAATATCAATATACTGTATAAGTATTGTTGGATATTGAAATGGACTTTGGCTGCTGCATGTACAACAAATTCAGTAAATGGTACAGTCTAGTCTAAGAGTCTAGTCTAATCTGCCTAGTTTGGTTTGGTGTGTGCCACCTCTGTGTCTGCAAACTGGTTACTCTAGTTTCACCTTTCATAACAGTTTACCTCTGCTATTTGATTACCACCAGTATGTTTGATATCCTCTTCTCTGTCAGGTCAACATGGTGACTCACCATCAACATGTGTTACCTAAGGTGATGCTGGCGATGAGGCTAGGAAGTTGTGCTTCATTTGCTAAGACTATTCTCAAATAACTACACCAGAGCAAGTCTGTGTACAACCAGATAAGGTGTCTTTGGTTCAACCAGATAAGTAGTCACAAGACCCGGGGCTTGGCTTGGTTTTTCTTGGTGATGTGTACTAATGTGAAAGAGAAAGCAGAAAGGCAGAAGGGACTTACAAACGTGGTGTGATTGCAAGCCAACTGTTTCGGTATGGAGTGGTTACACAATTGCCACTTCACCCATGTCAGATTTAGATCAAGATGTCGGCCATTTTGGGATGCCAGGAGGTCTTGAGATGAAATGGCTGCTGGTATTTCCCCAttgtgctctccctccctccttggcAGTGGGTAGGTGGATTGTTGTTAATAAGTCACCA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1771755 True 3966 lncRNA 0.42 1 40235120 40239085

Neighbor

gene id symbol gene type direction distance location
LOC110496227 LOC106569958 coding downstream 21340 40210284 ~ 40213780 (-)
LOC118941158 LOC106588400 coding downstream 25918 40208464 ~ 40209202 (-)
trnaa-ugc-138 NA coding downstream 47905 40187142 ~ 40187215 (-)
tapbp.1 LOC100136299 coding downstream 104925 40125565 ~ 40130195 (-)
LOC110496222 LOC106588403 coding downstream 112249 40111013 ~ 40122871 (-)
LOC110496231 LOC106569953 coding upstream 79960 40319045 ~ 40369178 (-)
LOC101268904 LOC106588394 coding upstream 153535 40392620 ~ 40416084 (-)
LOC100136269 LOC106588393 coding upstream 178490 40417575 ~ 40429473 (-)
LOC110496236 NA coding upstream 206170 40445255 ~ 40455548 (-)
rps18 LOC107726165 coding upstream 230024 40469109 ~ 40471565 (-)
G1548331 NA non-coding downstream 28078 40206639 ~ 40207042 (-)
G1548323 NA non-coding downstream 52982 40170859 ~ 40182138 (-)
G1548324 NA non-coding downstream 62283 40171489 ~ 40172837 (-)
G1548317 NA non-coding downstream 65911 40154838 ~ 40169209 (-)
G1548270 NA non-coding downstream 181519 40053375 ~ 40053601 (-)
G1548377 NA non-coding upstream 467 40239552 ~ 40239752 (-)
G1548380 NA non-coding upstream 6267 40245352 ~ 40245648 (-)
G1548381 NA non-coding upstream 8918 40248003 ~ 40248270 (-)
G1548384 NA non-coding upstream 21059 40260144 ~ 40260373 (-)
G1548385 NA non-coding upstream 21365 40260450 ~ 40260882 (-)
LOC110496816 LOC106588265 other downstream 546439 39642841 ~ 39688750 (-)
LOC110496208 LOC106588417 other downstream 604022 39625771 ~ 39641803 (-)
G1546396 LOC106588446 other downstream 1447319 38776284 ~ 38787801 (-)
G1546385 LOC106588448 other downstream 1461436 38768097 ~ 38773684 (-)
LOC110496175 LOC104924380 other downstream 1559091 38674378 ~ 38676029 (-)
G1548367 NA other upstream 146885 40385970 ~ 40391883 (-)
G1548517 NA other upstream 401090 40640175 ~ 40685641 (-)
LOC118941164 LOC106588367 other upstream 666602 40902519 ~ 40908744 (-)
LOC110496277 LOC106588347 other upstream 1424351 41663436 ~ 41671516 (-)
G1550177 LOC106569881 other upstream 2076201 42315286 ~ 42316079 (-)

Expression


Co-expression Network