G1547771


Basic Information

Item Value
gene id G1547771
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40284919 ~ 40285314 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1771062
tactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatctggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctcagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgt

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1771062 True 396 lncRNA 0.39 1 40284919 40285314

Neighbor

gene id symbol gene type direction distance location
psb8 psb8 coding upstream 27635 40249188 ~ 40257284 (+)
LOC118941049 NA coding upstream 46493 40236397 ~ 40238426 (+)
LOC110496230 abcb3 coding upstream 50383 40228255 ~ 40234536 (+)
LOC100135882 psmb9a coding upstream 57481 40224801 ~ 40227438 (+)
psb9 lmp2/d coding upstream 61109 40213765 ~ 40223810 (+)
LOC110496233 brd2 coding downstream 11739 40297053 ~ 40309566 (+)
LOC118941159 NA coding downstream 30909 40316169 ~ 40318834 (+)
LOC110496235 LOC106588392 coding downstream 175159 40460473 ~ 40464209 (+)
vps52 vps52 coding downstream 186834 40408575 ~ 40517763 (+)
LOC110496243 LOC106588384 coding downstream 202640 40487954 ~ 40500744 (+)
G1547770 NA non-coding upstream 1205 40283402 ~ 40283714 (+)
G1547761 NA non-coding upstream 36942 40247763 ~ 40247977 (+)
G1547760 NA non-coding upstream 38062 40246641 ~ 40246857 (+)
G1547759 NA non-coding upstream 39992 40244356 ~ 40244927 (+)
G1547758 NA non-coding upstream 40845 40243783 ~ 40244074 (+)
G1547773 NA non-coding downstream 1738 40287052 ~ 40287342 (+)
G1547697 LOC106588396 non-coding downstream 36975 40322289 ~ 40322867 (+)
G1547816 NA non-coding downstream 107312 40392626 ~ 40471675 (+)
G1547743 NA other upstream 82461 40201909 ~ 40202458 (+)
LOC110496221 LOC106588406 other upstream 178073 40103731 ~ 40110006 (+)
G1547652 LOC106588410 other upstream 244325 40035517 ~ 40040594 (+)
G1547334 LOC107666349 other upstream 523416 39761213 ~ 39761503 (+)
G1546817 LOC106588418 other upstream 815554 39467454 ~ 39469365 (+)
G1547788 NA other downstream 41161 40326475 ~ 40327181 (+)
G1547817 NA other downstream 141794 40427108 ~ 40429520 (+)
G1547834 rps18 other downstream 185055 40469109 ~ 40471582 (+)
G1547904 NA other downstream 422704 40708018 ~ 40717744 (+)
LOC110496251 LOC106569933 other downstream 452304 40736719 ~ 40738475 (+)

Expression


Co-expression Network