G1547840


Basic Information

Item Value
gene id G1547840
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40414796 ~ 40415849 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1771143
TATTCAGTTTGGTAGCTTAGTAACGTGTTATGCCTTGAGCCATTGCAAATATTGTCAACAAGCATCTCTAATGCACCAACTATAGTTGACCACTGTAGCTGGAACATAAAAAACAAAATGCTGAAGTGGCTTGATAGTTAGCGAAATTCATTCGAAAACACCAGTGGCATTCTCTTACCTCTGCTGTCACCCATTATTACCTCCTTGGTGGAAAAGACGTGCTGGGACACGGATAGACGTGCTTCAATCACACTCCGCTATCTAACTCAAGACCGCGGACTGAGGCCCGGGCCAGAGTCGTTTTCGGATGACCAAAAACAGGACTTTTTTGACAGTGCAGTTTCTTCGCATGAAAAGATGTGGTGGTCAGGCCCCGAGTTCGCATGAAAAGATGTGGTGGTCAGGCCCCaagttcttcctctcctctctccccactttGCCTCGCCGTCAGCCCTCCCTTTCCCTGTACAGCCCTTCTGCCTGTGGCTGACGGAGTAGCTACCGTACCAAAAACAGCACCGTTTGAAGAGGTTTCTGCATTACGATGCATTTACATGCCACTTCAACAttttatggcagccatgttag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1771143 True 588 lncRNA 0.48 2 40414796 40415849
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118941159 NA coding upstream 95962 40316169 ~ 40318834 (+)
LOC110496233 brd2 coding upstream 105230 40297053 ~ 40309566 (+)
psb8 psb8 coding upstream 157512 40249188 ~ 40257284 (+)
LOC118941049 NA coding upstream 176370 40236397 ~ 40238426 (+)
LOC110496230 abcb3 coding upstream 180260 40228255 ~ 40234536 (+)
LOC110496235 LOC106588392 coding downstream 44624 40460473 ~ 40464209 (+)
vps52 vps52 coding downstream 56299 40408575 ~ 40517763 (+)
LOC110496243 LOC106588384 coding downstream 72105 40487954 ~ 40500744 (+)
LOC110496240 LOC106588375 coding downstream 110036 40525885 ~ 40542149 (+)
LOC110496237 LOC105028059 coding downstream 147121 40562970 ~ 40601009 (+)
G1547697 LOC106588396 non-coding upstream 91929 40322289 ~ 40322867 (+)
G1547773 NA non-coding upstream 127454 40287052 ~ 40287342 (+)
G1547771 NA non-coding upstream 129482 40284919 ~ 40285314 (+)
G1547770 NA non-coding upstream 131082 40283402 ~ 40283714 (+)
G1547815 NA non-coding downstream 1558 40417407 ~ 40420396 (+)
G1547834 rps18 non-coding downstream 53260 40469109 ~ 40471582 (+)
G1547880 NA non-coding downstream 104438 40520287 ~ 40520591 (+)
G1547888 NA non-coding downstream 128626 40544475 ~ 40544828 (+)
G1547910 NA non-coding downstream 146470 40562319 ~ 40562524 (+)
G1547788 NA other upstream 87615 40326475 ~ 40327181 (+)
G1547743 NA other upstream 212338 40201909 ~ 40202458 (+)
LOC110496221 LOC106588406 other upstream 307950 40103731 ~ 40110006 (+)
G1547652 LOC106588410 other upstream 374202 40035517 ~ 40040594 (+)
G1547334 LOC107666349 other upstream 653293 39761213 ~ 39761503 (+)
G1547817 NA other downstream 11259 40427108 ~ 40429520 (+)
G1547904 NA other downstream 292169 40708018 ~ 40717744 (+)
LOC110496251 LOC106569933 other downstream 321769 40736719 ~ 40738475 (+)
G1548171 ndufb9 other downstream 749705 41165554 ~ 41169102 (+)

Expression

G1547840 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.25.
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G1547840 Expression in each Bioproject

Bar chart with 14 bars.
G1547840 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 12.
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Co-expression Network