G1547815


Basic Information

Item Value
gene id G1547815
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40417407 ~ 40420396 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1771110
ctgggatcttttatttcagctcgtgaaatatggtaccaacactttacattttgcgtttatatttctgttcagtgtatatgGCTCTGGGCacaaactgcttctccaatagacaGGTTGGctgtttagcaacaaaacagaCGGGGTTGGTTTAGATTGTTGACATGTAACTATATTTCGTCtacaatgtttattgaaaacatacatttgcacaatgagcgaatttgAACAATATTAGCATAGGCGTGACAGTCAAAGCACCTCAAAataagacatggtatcaagaacaagatcaaACTAGAGGATGACTTTACAAGTAAAGATGCGGGCTTGCTTTAATTTAACATAATTTTTGTGGTAAACGTAAAAGTTTAGAAGTTTTACTAAGATATTTCAAGCAAAGCAGTTACATTcacagtgcacaaaacattaggaacacctctttccatgacatagatgctaggtgcaccggtttgagtgtcaagaactgcaccgCTGATGGGATTTTCACActcagtttcccatgtgtatcaagaattttccaccacccaaaggacatccagccaacttgacacgaaTCTGGcaatcattggagtcaacatgggccaggatCACTGTAGACCGcttccgacaccttgtagaattgAGGTGGTTCTGAGTGCAAAcgggtgtgcaactcaatattaggaatgtgttcctacTGTTTTGTACATTTAGcgtatgtatattatatataataatacGGTCACACTTGGCCTGCATCTTGTGTTTGTGATCGGTTGTTAATTTCCCCCCCAATATCTAGCCTAGGTTGGATTATAAACTAATCAAGTATTGGATTGCTTGTATTTTTCATGTTCTCTTGCATTATCTAATGAGAAACAGGGACCCAGTAAAATATAGTGTAAACATTGTAAGGGAATCTTAATTGTTTAATGAAAAGTCCAAGAAAACAAAGTAACACAAATTCCACCATACTCTCTTACTAAATCTCCCACCCACCACTTTAACATTAATCCTTTTTACTTGGTCCCTCTGATTAAAAGTTCTGATTCCAAATCAAGCCATTGCACCCAACTATAAGCCAATGTTGACAACTTAAGGCATCTGATAAGACTGGCAATGTAAAGGAATACATTGGATGGAAACAACCTAATTATTACAAATGCCTACGTAAAGCAGCTTACTATACAATATTGACAATACAAACCATCTCAGATACATAACAAAAAAGTCAACAAGGTAAATGGGGATAGCAGCGTGGGGTTGGTTTGGAATCAGCCCAAAGATGCAGTCGTGTACATACAGAATGGTTTAGGGTGAAGGAGCTCTTTCTAACCACATTACAGCTACAGCATTGATTGTCTTTATGACACATAAGGCCTACTGTATTATTCAAGAGTGGAGGGAAAGCAGACACCCattcaagaaaaaaaaaaagagaatagTACACGTGAATAAAAATGAATAAATGTTACAATTCAACAAAACCTGCTGCCGCGGCTTATTAACACTAAACAAAAGTAGAAGAGGATTCATCATTCAGTTGTTCAAAGGTAGGTCAAACATTCCTTCCAGACACATTAAGATAAATTAGGGTGGAAGATTCCTGTCACTGGATAATCGGTTCAGTTTCCAAATGGCCTGTCCACCCTAAATACATGAATTTACTGTACTTCCACATTATGAAGGTAATTCATGTGACGGGCACATTTAAAGCAATTTATTCACTATGAAGCTAATCATACTCCAAAGATCCTCTAAGCACAGCTTACATCACTTACCCATTGAGTAATAATGAAATTAAGAGATAGTCACATACTGGTACAACTCATGATTTTCATGCAACTCGAAAGCATCCAACAGTTATGAAAACAGTTACAAACAAGTGGCTTGGTCAGTAACTGCCGTGTGCTGTAGACATCTAAAGCAGCTTATTCATGTTTCCCAATAAGTCACATTCCGGAAGCTGATGACATTTCAGGAGCCTCTTGGCCTCATATATGTCAAGTATCTAAGATGGCTGCTGTTTGGGGACCTGGTTTATGGACTACACGTTATAATATTATGCCCTTTTCATTTCATTGGAATGTTCCAGTTGTAGACTAACATACTCTGATCCAAATAAACCCTGAATTTAAACCCAGGAAAATGCCCTAACCACTTTACTGTCTAGTTCTATTGTGTTCAATCTGTGATCTCTGCAAGTACAATTAAAGGCAAACGTAAGCATTAAACATATTGGTATGATTGCAATTCTTGATTTTAACTATAGTTCACGGCAACTTAAACGGACACTGTTTTGGTTAGCCTTTTTATGACCAAAAGGGAATAAACTCTGCAATTATTAATGGACGATGAACTACAACTCCCAAGTCATCTGCGTAGCTTGCCTAAGTCTCGGTTTGATGACCTATCTGATTTAGACATGCCGATGAGGACTTTGTAGAGTACATATCTTATTGCTCATCATCCTGCAGATGGTTTGTGTTAAAATGCTACTCCCCATTCAAGTCCCCTTTGGAACCTAGTCCAGTCCTGTGAAAGCCATGTCTGTCACTTATCTTCTCACCCTCTCCTTTAAACTCCATCAGTATCTTTCCCTCCAATCGTATAAATCCATCTCTCACATTCGGTTTCTGCTCCTCCTCtaaatccctccctccttctaccGCCCTTACTTTTTGATGACTCGCTGTCTCACTCATACTCTGCGATTAGCACCATCATGTAAATTCCAACCAGCATCGCTAGGATCTCCATCACTGATTGGCCCAGACTGGAGCGGCCAACCAGCAGCTCAGGCAGAACCGTCACCGTGGCAATGTACACAAAGCCACCCGCAGTGAATGGTAGGATCCAGGCTGTGGCGGCCGCACCCACACCCTCAGCCAATAGGGAGCAGGCTGTGCCGGCAAGAGCCCCCAAGGCTGTCAGCAGCTGTAGAC

Function

NR:

description
zinc transporter Slc39a7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1771110 True 2945 lncRNA 0.40 2 40417407 40420396

Neighbor

gene id symbol gene type direction distance location
LOC118941159 NA coding upstream 98573 40316169 ~ 40318834 (+)
LOC110496233 brd2 coding upstream 107841 40297053 ~ 40309566 (+)
psb8 psb8 coding upstream 160123 40249188 ~ 40257284 (+)
LOC118941049 NA coding upstream 178981 40236397 ~ 40238426 (+)
LOC110496230 abcb3 coding upstream 182871 40228255 ~ 40234536 (+)
LOC110496235 LOC106588392 coding downstream 40077 40460473 ~ 40464209 (+)
vps52 vps52 coding downstream 51752 40408575 ~ 40517763 (+)
LOC110496243 LOC106588384 coding downstream 67558 40487954 ~ 40500744 (+)
LOC110496240 LOC106588375 coding downstream 105489 40525885 ~ 40542149 (+)
LOC110496237 LOC105028059 coding downstream 142574 40562970 ~ 40601009 (+)
G1547840 NA non-coding upstream 1558 40414796 ~ 40415849 (+)
G1547697 LOC106588396 non-coding upstream 94540 40322289 ~ 40322867 (+)
G1547773 NA non-coding upstream 130065 40287052 ~ 40287342 (+)
G1547771 NA non-coding upstream 132093 40284919 ~ 40285314 (+)
G1547834 rps18 non-coding downstream 48713 40469109 ~ 40471582 (+)
G1547880 NA non-coding downstream 99891 40520287 ~ 40520591 (+)
G1547888 NA non-coding downstream 124079 40544475 ~ 40544828 (+)
G1547910 NA non-coding downstream 141923 40562319 ~ 40562524 (+)
G1547911 NA non-coding downstream 143134 40563530 ~ 40563743 (+)
G1547788 NA other upstream 90226 40326475 ~ 40327181 (+)
G1547743 NA other upstream 214949 40201909 ~ 40202458 (+)
LOC110496221 LOC106588406 other upstream 310561 40103731 ~ 40110006 (+)
G1547652 LOC106588410 other upstream 376813 40035517 ~ 40040594 (+)
G1547334 LOC107666349 other upstream 655904 39761213 ~ 39761503 (+)
G1547817 NA other downstream 6712 40427108 ~ 40429520 (+)
G1547904 NA other downstream 287622 40708018 ~ 40717744 (+)
LOC110496251 LOC106569933 other downstream 317222 40736719 ~ 40738475 (+)
G1548171 ndufb9 other downstream 745158 41165554 ~ 41169102 (+)

Expression


Co-expression Network