G1548540 (LOC106588374)


Basic Information

Item Value
gene id G1548540
gene name LOC106588374
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40579590 ~ 40580803 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1771936
AGAATATTTGGATGACTTACCGGTGCCACAGTCAGCTCCAGTGAACCCAGCTTCACACTGGCTGCAGTCCGGGACGGCGAAACCACGgcgacacacacacctccccttcACACAGCGCCCTTTGTTGCTGCAGTTATCGGGACAGCCCTTAGCGGCGCAGTCCTGTCCGCTGAAGCCCACTTCACACACGCACTTCCCGTTCACGCACCTTCCCTTGTTGCTGCAGTTATTGGGACATGCTTTGGCGGAACAGTCTGGCCCCGTAAAGCCGCTATCGCAGACACACTGGCCGTTCACACACTTTCCACGGTTGCTGCAGTTGCCAGGGCAGGACTTGGTAGAACAGTCTGGCCCTGTAAAActgctatcacacacacacttgccgtTCACACATTGCCCCTTGTTGTTACAGTTACCAGGACATGCCTTGGTGGAGCAGTCAGGGCCTGTGAAGCCAGTGTTGCACACACACTTGCCGTTCACACATTGCCCCTTGTTGTTACAGTTACCAGGGCATGCCTTGGTGGAGCAGTCAGGCCCTGTGAAGCCAGTGTTGCACACACACTTGCCGTTCACACATTGCCCCTTGTTGTTACAGTTACCAGGGCATGCCTTGGTGGAGCAGTCAGGCCCTGTGAAGCCAGTGTTGCACACACACTTGCCGTTCACACATTGCCCCTTGTTGTTACAGTTACCAGGACATGCCTTGGTGGAGCAGTCAGGGCCTGTGAAGCCAGTGTTGCACACACACTTGCCGTTCACACATTGCCCCTTGTTGTTACAGTTACCAGGGCATGCCTTGGTGGAGCAGTCGGGCCCTGTGAAGCCAGTGTTGCACACACACTTGCCGTTCTCACAACGCCCCTTGTTGTTACAGTTACCAGGACAGGACTCTGAAGAGCAGTCTGGCCCTGTGAAACCTGGGTCGCACACACACTGGCCGTTCACACACGTCCCCTTGTCATTGCAGTTGCCGGGGCAGTCAGACAAACTGCAGTCTGGCCCACTGAACCCTGGGAAGCAGACACACTTGCCATCCTCACAGCGTCCCTGGTCACTGCACTCGTTAGGACACTCGTCTCCCTCCGGCTTGATGGAGCACTCAGTGCCTAAAGCGGGGG

Function

NR:

description
PREDICTED: tenascin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1771936 True 1121 lncRNA 0.56 2 40579590 40580803

Neighbor

gene id symbol gene type direction distance location
LOC110496249 NA coding downstream 25971 40545209 ~ 40553619 (-)
LOC118941163 NA coding downstream 76112 40501665 ~ 40503478 (-)
LOC118941162 NA coding downstream 78180 40500738 ~ 40501410 (-)
LOC100653472 LOC100653472 coding downstream 91950 40485361 ~ 40487640 (-)
rps18 LOC107726165 coding downstream 108025 40469109 ~ 40471565 (-)
LOC118941161 NA coding upstream 94666 40675469 ~ 40678077 (-)
LOC110496253 LOC106588368 coding upstream 206024 40786827 ~ 40807771 (-)
LOC110496254 col14a1 coding upstream 234024 40814827 ~ 40901992 (-)
LOC118941164 LOC106588367 coding upstream 322953 40902519 ~ 40908744 (-)
ndufb9 ndufb9 coding upstream 584736 41165539 ~ 41169132 (-)
G1548525 NA non-coding downstream 24905 40554413 ~ 40554685 (-)
G1548521 NA non-coding downstream 34692 40544667 ~ 40544898 (-)
G1548520 NA non-coding downstream 36187 40542991 ~ 40543403 (-)
G1548508 NA non-coding downstream 60807 40518573 ~ 40518783 (-)
LOC101268904 LOC106588394 non-coding downstream 163900 40392620 ~ 40416084 (-)
G1548548 LOC106588374 non-coding upstream 10084 40590887 ~ 40591199 (-)
G1548518 NA non-coding upstream 19670 40600473 ~ 40601694 (-)
G1548556 NA non-coding upstream 24614 40605417 ~ 40605623 (-)
G1548557 NA non-coding upstream 25124 40605927 ~ 40606141 (-)
G1548559 NA non-coding upstream 28732 40609535 ~ 40609820 (-)
G1548367 NA other downstream 187707 40385970 ~ 40391883 (-)
LOC110496816 LOC106588265 other downstream 890909 39642841 ~ 39688750 (-)
LOC110496208 LOC106588417 other downstream 948492 39625771 ~ 39641803 (-)
G1546396 LOC106588446 other downstream 1791789 38776284 ~ 38787801 (-)
G1546385 LOC106588448 other downstream 1805906 38768097 ~ 38773684 (-)
G1548517 NA other upstream 59372 40640175 ~ 40685641 (-)
LOC110496277 LOC106588347 other upstream 1082633 41663436 ~ 41671516 (-)
G1550177 LOC106569881 other upstream 1734483 42315286 ~ 42316079 (-)
G1550202 NA other upstream 1778345 42359148 ~ 42359628 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00006259 NA coding CM030134.1 CM030134.1 1042862 ~ 1047510 (-)