G1548517


Basic Information

Item Value
gene id G1548517
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40640175 ~ 40685641 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1771911
cagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacgatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtcagttaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagccggatttggatacaaaaagacttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagaaatgcagccaaggggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagttgtatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgttgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggaagaaggtactctggtcagatgagactaaaattgagtttCAGCCATCAAGataaacgctatgtctggcgcaaactcaACACCCCGATATGAATAGCTATGCACACtcaaatgttcagtttttttgtcttatttcttgcttgtttcacaataaaaaatattttatcttcaaagtggtaggcatgttgtaaatcaaatgatacaaaccccccaaaaatctattttaattccatgttgtaaggcaacaaaataggaataatgtcaagggggtgaatactttcgcaagccactgtatatcactcaagaatagtctgatgggtgacaatatcaGCCTATCactgataggctaatattgtcacccatcagactattctcgatttaatcttgtctttacatatactaaatagtTTGTGTGAGAAATTTGTTTGGATTTAGAATGCACCGTTATCATGAACCTGTATGGAAACAGGGGCAGCTGGAATAAATACATCAGTAGACTATACTCCTGTTTTAAAGAGACGCAATGTGCTTAATACTAGGATAGTTGACAAAtaaaatatagtaggcctagcatATGGAAAGCTGATGGAATCCTATTTTTTATAATGACCATCATGctgttttctcacacaattgcatagcctatagaaatatttgagcaacatgagctcatgggctctcatgaagtgtttgattagatttgcaTTAATCTCAGAGTGATTAAAGGGACAATAGAGcttggagaagtctAATTagcgtgactaaacggtcatgcGGAATTTGACTGCCGTCATGACTCGTGGCCACACCGAAACAGCTCTAGCCATACTATAAAATTATGAAATGAATTGACTGTCCTTTATGGTCCAGTCAGGAAGTTTGGCCACCAACGGTC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1771911 True 1498 TUCP 0.40 3 40640175 40685641

Neighbor

gene id symbol gene type direction distance location
LOC110496249 NA coding downstream 86556 40545209 ~ 40553619 (-)
LOC118941163 NA coding downstream 136697 40501665 ~ 40503478 (-)
LOC118941162 NA coding downstream 138765 40500738 ~ 40501410 (-)
LOC100653472 LOC100653472 coding downstream 152535 40485361 ~ 40487640 (-)
rps18 LOC107726165 coding downstream 168610 40469109 ~ 40471565 (-)
LOC110496253 LOC106588368 coding upstream 101186 40786827 ~ 40807771 (-)
LOC110496254 col14a1 coding upstream 129186 40814827 ~ 40901992 (-)
LOC118941164 LOC106588367 coding upstream 218115 40902519 ~ 40908744 (-)
ndufb9 ndufb9 coding upstream 479898 41165539 ~ 41169132 (-)
LOC110496267 LOC106588355 coding upstream 540044 41225685 ~ 41327540 (-)
G1548571 NA non-coding downstream 18820 40621122 ~ 40621355 (-)
G1548568 NA non-coding downstream 22138 40617201 ~ 40618037 (-)
G1548559 NA non-coding downstream 30355 40609535 ~ 40609820 (-)
G1548557 NA non-coding downstream 34034 40605927 ~ 40606141 (-)
G1548556 NA non-coding downstream 34552 40605417 ~ 40605623 (-)
G1548612 LOC106588371 non-coding upstream 51123 40736764 ~ 40740990 (-)
G1548613 NA non-coding upstream 57092 40742733 ~ 40743516 (-)
G1548627 NA non-coding upstream 74704 40760345 ~ 40760570 (-)
G1548631 NA non-coding upstream 98337 40783978 ~ 40786646 (-)
G1548647 NA non-coding upstream 145724 40831365 ~ 40831747 (-)
G1548367 NA other downstream 248292 40385970 ~ 40391883 (-)
LOC110496816 LOC106588265 other downstream 951494 39642841 ~ 39688750 (-)
LOC110496208 LOC106588417 other downstream 1009077 39625771 ~ 39641803 (-)
G1546396 LOC106588446 other downstream 1852374 38776284 ~ 38787801 (-)
G1546385 LOC106588448 other downstream 1866491 38768097 ~ 38773684 (-)
LOC110496277 LOC106588347 other upstream 977795 41663436 ~ 41671516 (-)
G1550177 LOC106569881 other upstream 1629645 42315286 ~ 42316079 (-)
G1550202 NA other upstream 1673507 42359148 ~ 42359628 (-)
LOC118936491 LOC106588302 other upstream 2209390 42895031 ~ 43015119 (-)

Expression


Co-expression Network