G1548512 (LOC106588380)


Basic Information

Item Value
gene id G1548512
gene name LOC106588380
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40646962 ~ 40694732 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1771896
ttaggCTATACTATTTAAGTACTCACAGTCAGCCCTACTGAATTCTTTGGCCTCGTATGCCATGAATTTGGAAAGCCAGTCCACACACTCCTTCTCCAGGTAGCCCTTGGTGTACTGGTTGAGGATCTGGACCCCGTCCCACTTCCTCTTAGTCGGCTGAGCTTGAACAACTGGGGCCACCCACTGCATATTGGCATCATCAAAGGCCAGGAAGTCGTCACCATCGTAGCTGTACTGGTCTGTGCCCTTTATGAATTTCAATGTGCCGTCACTCTGTTGGTCAATTTCACAGCCATGTTTCCACTGAAGGATATGCACATCTGAGaggaaaaacaaatgaaaaagacGGTCAATGATGACAATATACATGGATAACTAATGACCTACAATTTTAAAAGATTAACGGTGAGCGTAGGACAGATTGCAGATGTTCCCTCACCAGTGCTGTTATGCATCATGCGCTTCATCAAGATATCGACATTAACTTTGAACCACTGCTCCTTGCTCTTGCGTGACTGAGTGCCTTTATCCCAGTAGTCTGCTGGCAGCTTCTCCCTCATCCAGGCCTGTTTGGGAATCTTCTTCTTTGCCACACTGCTCCTTGCTCTTGCGTGACTGAGTGCCTTTATCCCAGTAGTCTGCTGGCATCTTCTCCCTCATCCAGTCCTGTTTGGGAATCTTCTTCTTTGCCACACTGTCATAGCAATCTATCTGTTTGTCATTCATCAGACCCATGGCagtgaactcatggataccaggCAATTCTACTGGCTTTGACAGGGCAGTGTAGATGTAATTCAGCGACCATTTCTCCA
>TU1771899
ttaggCTATACTATTTAAGTACTCACAGTCAGCCCTACTGAATTCTTTGGCCTCGTATGCCATGAATTTGGAAAGCCAGTCCACACACTCCTTCTCCAGGTAGCCTTTGGTGTACTGGTTGAGGATCTGGACCCCGTCCCACTTCCTCTTAGTTGGCTGAGCTTGAACAACTGGGGCCACCCACTGCATATTGGCATCATCAAAGGCCAGAAAGTCGTCACCATCGTAGCTGTACTGGTCTGTGCCCTTTATGAATTTCAATGTGCCGTCACTCTGTCGGTCAATCTCACAGCCATGTTTCCACTGAAGGATATGGACATCTGAGAGGAAAAACAAATAGAATAGGAGAGGGAATGACTCACCTATGTTATGGTCCAGTCTGGGAGTTTTGGTGAAATATCTACAGTAGGCTGTGTAGAGTGACACAAATGCAAGTGTTGTTTCTCACCAGTGTTGTTGTGCCTCATGCGATCCATCAGGATGTTGATGTTGACTTTGAACCACTGCTCCTTGCTCTTGCGTGACTGAGTGCCTTTATCCCAGTAGTCTGCTGGCATCTTCTCCCTCATCCAGTCCTGTTTGGGAATCTTCTTCTTTGCCACACTGTCATAGCAATCTATCTGTTTGTCATTCATCAGACCCATGGCagtgaactcatggataccaggCAATTCTACTGGCTTTGACAGGGCAGTGTAGATGTAATTCAGCGACCATTTCTCCA
>TU1771898
ATTAAATTAACTGAAGAAAAACAGAGGAAGATGTCAGTAGATGTTTGAATGTACAATACAATTCTACAGTGTctcatgtggctcagttggtagagcgtggcacttgcaacaccagggttgtggattTGGTTCCTACGGGGGACCAGTACTAGAAATGGTATACCCTTACtacttactgtaagtcgctctggataagagcatctgtaaAATGTTAAATTATAAAACGCAGCCTTTTTTAGTTAGTTTTGTGTACATTGTATGTCCGTCACAGAAAAGCAACTTTCCTTGAGGCAACACCTAACTTCATGTACTGTCATTTGTTTAGTTGTGGCATTACAGACTTTGTTGCCTTACCATACTCTAAAGTGTTCACTCCAGAAAATGCCACTCCATTGCCAGTAGCTGGAAAAACACAATCTAAAGTTTCAGTACATTGAAAAAACATAATTATCTGTGACTTTCAAAAGtaattttaaataaatgtattcgGTGCAACCACTCTCTTCAGAAGAGGATCATGTAATGAGTGTCTTAAATAGGCCTTATTTTTCAGAACCAAAAAGTATATCTAAACACAGTAAATGCTTGATTGTTACATAGGGTGTCTTTACAATTGGATGAACAGTTAGTTTTGATATAAAAGCATCATGTTGTCCTTACAACTAGTGTCAAAAGTCTGTTATACGTAACGATAAATGACATGTATACAGACCGAGGGAGAGGCTGTGATACTAACCTCTAGTTCTCAAGCCAGGAATCACTTTGATGTGTAAAGAGAAAAATACATAGAAATGTTATAATGCATATGGATTTAGGCCGTAGTTCCCACCTTTCATAGCAGTACCGTTGATTCATCTTTTCTTAACatttaacaaaaacaaaaacatttgaatTGATATAAATCAAGACCTACCAATTGTCCCTCTTTTGTGCAGAACAAACAGGACCACCGAAACCAAGATCAGAACTACAATAATGGCGATGACTGCCCCAATGACTACAGCACCGAAACTTCTGCAATCACAACATTCTCCATCTGCAAAACAAAAGGCAGAGTATTTATAAAAAGCAACAATATGTAACCAGAAGCTAATTTCAGTTTCATTCCTGCTTCACCTGCAAAGCTGTTGTTAGTATGCTGTTCAGTTCAAATTaagattgtttcctgtgtcaatAACACTAAACCATATTAACCATCAATAACAACACTAAACCAAATTAGCCATACTTTACCCCATTTTACCACAATTGGCTTCTTCAATGTTCTATGGTCGACATAACATTCATAAGTTTCCTTATCTGCCTCTGGGATCTGCACACTCATCCTGATCTGGTAGGTGTCATCATCATTGGGTAGGACTCCTGTAGACTGCACTCCATCACGTTCGGTCAATGGAACACCATTCTTCTTAATTTGCATAATCACATCTTTGGGATAGAAACCTGTGGCCATGCAGGTCAGTCGGACATGTCCTGCAGTTTTGGCCTTTTTAGCAAATGCATAGACCCTCGGAGGGGCAGTCAGCCCTACTGAATTCTTTGGCCTCGTATGCCATGAATTTGGAAAGCCAGTCCACACACTCCTTCTCCAGGTAGCCCTTGGTGTACTGGTTGAGGATCTGGACCCCGTCCCACTTCCTCTTAGTCGGCTGAGCTTGAACAACTGGGGCCACCCACTGCATATTGGCATCATCAAAGGCCAGGAAGTCGTCACCATCGTAGCTGTACTGGTCTGTGCCCTTTATGAATTTCAATGTGCCGTCACTCTGTTGGTCAATTTCACAGCCATGTTTCCACTGAAGGATATGCACATCAGTGCTGTTATGCATCATGCGCTTCATCAAGATATCGACATTAACTTTGAACCACTGCTCCTTGCTCTTGCGTGACTGAGTGCCTTTATCCCAGTAGTCTGCTGGCAGCTTCTCCCTCATCCAGGCCTGTTTGGGAATCTTCTTCTTTGCCACACTGTCATAGTAATCAATCTGTTGGTTGTTCATCAGACCCATGGCAGTGAACTCATGGATTCCAGGCAATTCTAGTGGCTTTGAGAGTGAAGTGTAGATGTAATTCAGGGA

Function

NR:

description
class I histocompatibility antigen, F10 alpha chain-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1771896 False 815 lncRNA 0.47 2 40646962 40693142
TU1771899 False 724 lncRNA 0.47 2 40646962 40693142
TU1771898 True 2078 lncRNA 0.41 3 40692439 40694732

Neighbor

gene id symbol gene type direction distance location
LOC110496249 NA coding downstream 93343 40545209 ~ 40553619 (-)
LOC118941163 NA coding downstream 143484 40501665 ~ 40503478 (-)
LOC118941162 NA coding downstream 145552 40500738 ~ 40501410 (-)
LOC100653472 LOC100653472 coding downstream 159322 40485361 ~ 40487640 (-)
rps18 LOC107726165 coding downstream 175397 40469109 ~ 40471565 (-)
LOC110496253 LOC106588368 coding upstream 92095 40786827 ~ 40807771 (-)
LOC110496254 col14a1 coding upstream 120095 40814827 ~ 40901992 (-)
LOC118941164 LOC106588367 coding upstream 209024 40902519 ~ 40908744 (-)
ndufb9 ndufb9 coding upstream 470807 41165539 ~ 41169132 (-)
LOC110496267 LOC106588355 coding upstream 530953 41225685 ~ 41327540 (-)
G1548571 NA non-coding downstream 25607 40621122 ~ 40621355 (-)
G1548568 NA non-coding downstream 28925 40617201 ~ 40618037 (-)
G1548559 NA non-coding downstream 37142 40609535 ~ 40609820 (-)
G1548557 NA non-coding downstream 40821 40605927 ~ 40606141 (-)
G1548556 NA non-coding downstream 41339 40605417 ~ 40605623 (-)
G1548612 LOC106588371 non-coding upstream 42032 40736764 ~ 40740990 (-)
G1548613 NA non-coding upstream 48001 40742733 ~ 40743516 (-)
G1548627 NA non-coding upstream 65613 40760345 ~ 40760570 (-)
G1548631 NA non-coding upstream 89246 40783978 ~ 40786646 (-)
G1548647 NA non-coding upstream 136633 40831365 ~ 40831747 (-)
G1548367 NA other downstream 255079 40385970 ~ 40391883 (-)
LOC110496816 LOC106588265 other downstream 958281 39642841 ~ 39688750 (-)
LOC110496208 LOC106588417 other downstream 1015864 39625771 ~ 39641803 (-)
G1546396 LOC106588446 other downstream 1859161 38776284 ~ 38787801 (-)
G1546385 LOC106588448 other downstream 1873278 38768097 ~ 38773684 (-)
LOC110496277 LOC106588347 other upstream 968704 41663436 ~ 41671516 (-)
G1550177 LOC106569881 other upstream 1620554 42315286 ~ 42316079 (-)
G1550202 NA other upstream 1664416 42359148 ~ 42359628 (-)
LOC118936491 LOC106588302 other upstream 2200299 42895031 ~ 43015119 (-)

Expression


Co-expression Network